Locus 3257

Sequence ID 3L_DroMel_CAF1
Location 9,532,183 – 9,532,275
Length 92
Max. P 0.536227
window5063

overview

Window 3

Location 9,532,183 – 9,532,275
Length 92
Sequences 4
Columns 93
Reading direction forward
Mean pairwise identity 92.64
Mean single sequence MFE -21.07
Consensus MFE -19.34
Energy contribution -19.15
Covariance contribution -0.19
Combinations/Pair 1.06
Mean z-score -1.32
Structure conservation index 0.92
SVM decision value 0.01
SVM RNA-class probability 0.536227
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9532183 92 + 23771897
CUGAUUGCUUGGCUGAGCUAAUCGAUUUUUCUUGUU-UCCCCCCCAUACUAUCAUUCUGCUUUUGGGUUACUCCACUUUGGCUUAGCACCGCC
......((...((((((((((..((....)).....-.....((((.................))))..........))))))))))...)). ( -19.33)
>DroSec_CAF1 41232 93 + 1
CUGAUUGCUUGGCUGAGCUAAUCGAUUUUUCUUGUUCUGCCCCCCAUACAACCGUUCUGCUUUUGGGUUACUCCACUUUGGCUUAGCACCGCC
......((...((((((((((..((....))...........((((.................))))..........))))))))))...)). ( -19.33)
>DroSim_CAF1 43345 93 + 1
CUGAUUGCUUGGCUGAGCUAAUCGAUUUUUCUUGUUCUGCCCCCCAUACAACCGUUCUGCUUUUGGGUUACUCCACUUUGGCUUAGCACCGCC
......((...((((((((((..((....))...........((((.................))))..........))))))))))...)). ( -19.33)
>DroEre_CAF1 41429 91 + 1
CUGAUUGCUUGGCUGAGCUAAUCGAUUUUUCUUGUU--GCUCCCCGUACAACCAUUCCGCGUUUGGGUUGCACCACUUUGGCUUAGCAGCGCC
......(((..((((((((((..((....)).((.(--((..((((.((...........)).))))..))).))..)))))))))))))... ( -26.30)
>consensus
CUGAUUGCUUGGCUGAGCUAAUCGAUUUUUCUUGUU_UGCCCCCCAUACAACCAUUCUGCUUUUGGGUUACUCCACUUUGGCUUAGCACCGCC
......((...((((((((((..((....))...........((((.................))))..........))))))))))...)). (-19.34 = -19.15 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:09 2006