Locus 3256

Sequence ID 3L_DroMel_CAF1
Location 9,531,995 – 9,532,109
Length 114
Max. P 0.939320
window5062

overview

Window 2

Location 9,531,995 – 9,532,109
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 91.44
Mean single sequence MFE -22.64
Consensus MFE -19.20
Energy contribution -19.48
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.73
Structure conservation index 0.85
SVM decision value 1.28
SVM RNA-class probability 0.939320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9531995 114 - 23771897
AAAAAAAAAAUGGAGAGGUAUCACGACUUGGCCCCACACCCCAUCGAAUUCAAAUGAGUGCCCCAGUCAGUCGUUGAUUCCACCAAAUGGAAACCAUUUCCGCAAACUCACACA
...........((((((((.((((((((.(((....(((..(((.........))).))).....)))))))).)))(((((.....)))))))).)))))............. ( -24.20)
>DroSec_CAF1 41047 111 - 1
AAA---AAAAUGGAGAGGGUUCACGACUUGGCCCCACACCCCAUCGAAUUCAAAUGAAUCCCCCAGUCAGUCGUUGAUUCCACCAAAUGGAAACCAUUUCCGCACACUCACACA
...---.....(((((.(((((((((((.(((....(........).((((....))))......)))))))).)))(((((.....)))))))).)))))............. ( -21.80)
>DroSim_CAF1 43165 106 - 1
AAA---AAAAUGGAGAGGUAUCACGACUUGGCCCCACACCCCAUCGAAUUCAAAUGAAUCCCCCAGUCAGUCGUUGAUUCCACCAAAUGGAAACCAUUUCCGCACACUC-----
...---.....((((((((.((((((((.(((....(........).((((....))))......)))))))).)))(((((.....)))))))).)))))........----- ( -21.90)
>DroEre_CAF1 41245 111 - 1
GAA---UGAAUGGAGAGGUAUCACGACGUGGCCCCACAACCCAUCGAAUUCAAAUGAAUCCCCCAGCCAGUCGUUGAAUCCACCAAAUGGAAACCAUUUCCGCACACUCACACA
((.---((..(((((((((.(((((((.((((....(........).((((....))))......)))))))).))).((((.....)))).))).))))))..)).))..... ( -26.20)
>DroYak_CAF1 44168 111 - 1
AAA---AAAAUUGAGAGGUAUCACGACUUGGCCCCACACCCCAUCGAAUUCAAAUGAAUGCCCCAGUCAGCCGUUGAAUCCAGCAAAUGGAAACCAUUUCCGCACACUCACACA
...---........(((((.....((((.(((....(........).((((....)))))))..)))).((.((((....))))....((((.....)))))))).)))..... ( -19.10)
>consensus
AAA___AAAAUGGAGAGGUAUCACGACUUGGCCCCACACCCCAUCGAAUUCAAAUGAAUCCCCCAGUCAGUCGUUGAUUCCACCAAAUGGAAACCAUUUCCGCACACUCACACA
..........(((((((((.(((((((.((((....(........).((((....))))......)))))))).))).((((.....)))).))).))))))............ (-19.20 = -19.48 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:08 2006