Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,522,294 – 9,522,388 |
Length | 94 |
Max. P | 0.998790 |
Location | 9,522,294 – 9,522,388 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 74.20 |
Mean single sequence MFE | -21.18 |
Consensus MFE | -6.74 |
Energy contribution | -8.22 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.10 |
Mean z-score | -2.81 |
Structure conservation index | 0.32 |
SVM decision value | 3.23 |
SVM RNA-class probability | 0.998790 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9522294 94 - 23771897 AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUUUCGUACCGAAAAAAA-AA-CAAAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA .....((.((((((.......)))))).)).(((((((((((...)))))....-.(-((.(((((((((...))))-))))).)))...)--))))). ( -26.60) >DroSec_CAF1 31283 83 - 1 AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAG------UACCGAAAAAA-------AAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA .....((.((((((.......)))))).)).(((((------((.........-------.(((((((((...))))-)))))......))--))))). ( -21.49) >DroSim_CAF1 33574 95 - 1 AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUCUCGUACCAAAAAAAA-AAAAGAAUGUAUAUAAUUUAUA-UGCAUAUGUAUUG--CUGUUA .....((.((((((.......)))))).)).((((((...((((..........-.......((((((((...))))-))))))))....)--))))). ( -21.42) >DroYak_CAF1 34061 96 - 1 AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUUUCAUACCGACAAAAACGAAAAAACGUAUAUAAUUUAUA-UGCAUACGUAUCG--CUGUUA .....((.((((((.......)))))).)).((((((....((((((.......)).......(((((((...))))-)))....)))).)--))))). ( -21.10) >DroAna_CAF1 27154 89 - 1 AAUCCAA---------UGAGAUGGGGAAUCAAACAAUUCUCGAUUCAAAGAGAU-AUAUGUAUUUGUGUACUAUAUAGUGCCACUAUAUUCACAUGUUA .((((..---------((((.(.((((((......)))))).)))))..).)))-.........((((....((((((.....)))))).))))..... ( -15.30) >consensus AAUCAGAAUGCUGCGUUGUAAGCGGCAAUCAAACAGUUCUCGUACCGAAAAAAA_AAAAAAAUGUAUAUAAUUUAUA_UGCAUAUGUAUUG__CUGUUA .....((.((((((.......)))))).)).(((((............................((((.....)))).(((....))).....))))). ( -6.74 = -8.22 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:07 2006