| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,520,875 – 9,520,970 |
| Length | 95 |
| Max. P | 0.545162 |
| Location | 9,520,875 – 9,520,970 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 71.74 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -5.76 |
| Energy contribution | -7.98 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.26 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9520875 95 + 23771897 CUCUGG-----CCGCACAAAAACCAAAACAGAGAAACUUGGCCAAAACGCUGGGCCAUGCU----UCCCCGCGCA--CUCCACCAGCCCCUUUGGCCAACUCUGUG ...(((-----...........)))..((((((....(((((((((..(((((....(((.----.......)))--.....)))))...))))))))))))))). ( -31.20) >DroPse_CAF1 33655 92 + 1 CUCUGGGGCUUCCACACGGAAACCAAAACAGAGAAACAUUGCGAAAUCGCAUUG--AGGCU-----CCCAUCGGACACCCCAACCACCCCCC---CGCAC----UA ...(((((..(((....(....).......(((...((.((((....)))).))--...))-----).....)))..)))))..........---.....----.. ( -24.70) >DroSec_CAF1 29857 95 + 1 CUCAGG-----CCGCACAAAAACCAAAACAGAGAAACUUGGCCAAAACGCUGGGCCAUGCU----CCCCCUCGCA--CUUCACUAGCCCCUUACGCCCACUCCGCA ....((-----(((........................))))).....(((((((..(((.----.......)))--((.....))........)))))....)). ( -15.76) >DroSim_CAF1 32152 95 + 1 NNNNNN-----NNGCACAAAAACAAAAACCGAGAAACUCGGCCAAAACGGGGGGCCAUGCU----CCCCCUCGCA--CUUCACUAGCCCCUUUGGCCCACUCCGCA ......-----..((...............(((...)))(((((((..(((((((...)))----))))...((.--........))...)))))))......)). ( -26.00) >DroEre_CAF1 29901 98 + 1 CUCUGG-----CCGCACAAAAACCAAAACAGAGA-ACUUGGCCAAAACGCUGGGCCAUGCUGAAGCCCCCGCACA--CCCCACCCUCCCCUUUGGCCCACUCCAUG (((((.-----.................))))).-....(((((((..(.((((...(((.(......).)))..--.)))).)......)))))))......... ( -20.87) >DroYak_CAF1 32607 87 + 1 CUCUGG-----CCGCACAAAAACCAAAACAGAGAAACUUGGCCAAAACGCUGGGCC------------CAGUUCC--CCCCACCAACCCCUUUGGCCCACUCCAUG (((((.-----.................)))))......(((((((..(.((((..------------.......--.)))).)......)))))))......... ( -16.57) >consensus CUCUGG_____CCGCACAAAAACCAAAACAGAGAAACUUGGCCAAAACGCUGGGCCAUGCU____CCCCCGCGCA__CCCCACCAGCCCCUUUGGCCCACUCCGUA (((((.......................)))))......(((((((.....(((................................))).)))))))......... ( -5.76 = -7.98 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006