| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,517,364 – 9,517,478 |
| Length | 114 |
| Max. P | 0.905874 |
| Location | 9,517,364 – 9,517,478 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.06 |
| Mean single sequence MFE | -36.14 |
| Consensus MFE | -25.46 |
| Energy contribution | -26.77 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905874 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9517364 114 + 23771897 AUCUGUUUUCGGAUUGCGAUAUACAAUCGAACGGGGUGGAAAUUGAUCUGGCAGAGUUACUAUAUAUCUGCCAAAAUAGUUUCGAAUCUUUAUGAAGAUGGGCGAUUCGAUGGG ........((((((((((((.....)))....(((((.(((((((.(.(((((((...........))))))).).)))))))..)))))...........))))))))).... ( -30.10) >DroVir_CAF1 26272 114 + 1 ACCUGUCUUCCGAUCCCGAUAGCCCAACGAACGCGGCGACACCUGAUCGGGCAGCGUGCGUGCCGUCAGCCCAUGGUAGUUAUAUUGCCUGGCAAAGAUAGGGCUGCUGUUCGG .........((((...((.((((((.......((((((.((((((......))).)))..))))))..(((...((((((...)))))).))).......)))))).)).)))) ( -39.20) >DroSec_CAF1 26349 114 + 1 ACCUGUCUUCGGAUUGCGAUAUACAAUCGAACGGGGUGGAAAUUGAUCCGGCAGAGUUACUAUAUAUCUGCCAAAAUAGUUUCGAACCUUGAUGAAGAUGGGUGAUUCGAUGGG ((((((((((((((((.......)))))...((((((.(((((((....((((((...........))))))....)))))))..)))))).)))))))))))........... ( -39.00) >DroSim_CAF1 28542 114 + 1 ACCUGUCUUCGGAUUGCGAUAUACAAUCGAACGGGGUGGAAAUUGAUCCGGCAGAGUUACUAUAUAUCUGCCAAAAUAGUUUCGAACCUUGAUGAAGAUGGGUGAUACGGUGGC ((((((((((((((((.......)))))...((((((.(((((((....((((((...........))))))....)))))))..)))))).)))))))))))........... ( -39.00) >DroEre_CAF1 26422 114 + 1 GCCUGUUUUCGCAUUGCGAAAUACAAUCGAACGGGGUGGAAACUGAUCCGGCAGAGUCACUAUAUUAAUGCCGAAAUAGUUUCGAACCUUGAUAAAGAUGGGUGAUUCGGUGGG (((...((((((...))))))(((.(((...((((((.(((((((...(((((...............)))))...)))))))..)))))).....)))..)))....)))... ( -31.46) >DroYak_CAF1 29094 114 + 1 GCCCGUCUUUGAAUUGCGAUAUACAAUCGAACGGGGUGGAAAUUGAUCCGGCAGUGUGACUAUAUAUCUGCCAAAAUAGUUUCGAACCUUGAUAAAGAUGGGUGAAUCGGUGGG (((((((((((.....((((.....))))..((((((.(((((((....(((((((((....)))).)))))....)))))))..)))))).)))))))))))........... ( -38.10) >consensus ACCUGUCUUCGGAUUGCGAUAUACAAUCGAACGGGGUGGAAAUUGAUCCGGCAGAGUUACUAUAUAUCUGCCAAAAUAGUUUCGAACCUUGAUAAAGAUGGGUGAUUCGGUGGG (((((((((((.....((((.....))))..((((((.(((((((....(((((.............)))))....)))))))..)))))).)))))))))))........... (-25.46 = -26.77 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:05 2006