| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 943,555 – 943,652 |
| Length | 97 |
| Max. P | 0.928879 |
| Location | 943,555 – 943,652 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -29.97 |
| Consensus MFE | -25.00 |
| Energy contribution | -26.57 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.83 |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.928879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 943555 97 + 23771897 CUCUCCCGCACGACACAUCUCUUUCACUCCGACAAGUGGCAAUAACAUGUCACAAGAGCAAGUGCAAGUGAGAGGGAGACGGCCAGCGAAGGAGACA .((((((((........(((((((((((.......((((((......))))))....((....)).)))))))))))........)))..))))).. ( -33.49) >DroSec_CAF1 78584 97 + 1 CUCUGCCGCACGACAUAUCUCUUUCACUCCGACAAGUGGCAAUAACAUGUCACAAGAGCAAGUGCGAGUGCGAGGGGGACAGACAGCGAAGGAGACA ((((..(((........((((((.(((((......((((((......))))))....((....))))))).))))))........)))..))))... ( -31.49) >DroSim_CAF1 70504 97 + 1 CUCUGCCGCACGACAUAUCUCUUUCACUCCGACAAGUGGCAAUAACAUGUCACAAGAGCAAGUGCAAGUGCGAGGGGGACAGACAGCGAAGGAGACA ((((..(((........((((((.((((.......((((((......))))))....((....)).)))).))))))........)))..))))... ( -27.89) >DroEre_CAF1 80500 81 + 1 CUCUCGCACACACCCCUUCCCUUUCGCUCCGGCAAGUGGCAAUAACAUGUCACACGAGCAAGUGCAAGUGGGAGGGAGACA---------------- .............((((((((((.((((...((..((((((......))))))....)).)))).))).))))))).....---------------- ( -27.00) >consensus CUCUCCCGCACGACACAUCUCUUUCACUCCGACAAGUGGCAAUAACAUGUCACAAGAGCAAGUGCAAGUGCGAGGGAGACAGACAGCGAAGGAGACA ((((..(((........(((((((((((.......((((((......))))))....((....)).)))))))))))........)))..))))... (-25.00 = -26.57 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:16 2006