| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,504,450 – 9,504,570 |
| Length | 120 |
| Max. P | 0.973855 |
| Location | 9,504,450 – 9,504,570 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.25 |
| Mean single sequence MFE | -36.42 |
| Consensus MFE | -31.08 |
| Energy contribution | -32.12 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.85 |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.973855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9504450 120 + 23771897 UUUAUCCAAGCUAUUUUCACCAGUCGUCGGCCGGAUAUACGGCUACAUGUGGAUCCAUUGCCGGUGACCUAAUGAUCUUCGCUGUGGUCCUGCAGGUCAUCAUGCACUACGAAAGACUGG ...................((((((((.(((((......))))))).(((((......(((.((((((((.(.((((........)))).)..))))))))..))))))))...)))))) ( -38.70) >DroSec_CAF1 20947 120 + 1 UUUAUCCAACCUAUUUUCACCAAUCGUUGGCCGGUUAUACUGCUACAUGUGGAUCCAUUGCCGGUGACCUCAUGAUCUUCGCUGUGGUCCUGCAGGUCAUCAUGCACUACGAACGACUGG ...................(((.((((((((.((...(((........)))...))...)))((((((((((.((((........)))).)).))))))))..........))))).))) ( -34.10) >DroSim_CAF1 23111 120 + 1 UUUAUCCAACCUAUUUUCACCAAUCGCUUGCCGGAUAUACUGCUACAUGUGGAUCCAUUGCCGGUGACCUCAUGAUCUUCGCUGUGGUCCUGCAGGUCAUCAUGCACUACGAACGACUGG ...................(((.(((.(((..((((.(((........))).))))..(((.((((((((((.((((........)))).)).))))))))..)))...))).))).))) ( -33.40) >DroEre_CAF1 21001 120 + 1 UUUAUCCAACCUACUUCCACCAGUCGCACGCCGGAUAUACGGCUACAUGUGGAUCCAUCGCCGGUGACCUCAUGAUCUUCGCUGUGGUCCUGCAGGUCAUCAUGCACUACGAUAGACUGG ...................((((((((..((((......)))).....(((....))).)).((((((((((.((((........)))).)).)))))))).............)))))) ( -38.30) >DroYak_CAF1 23507 120 + 1 UUUAUCCAACCUAUUUUCACCAGUCGCUCGCCGGAUAUACGGCUACAUGUGGAUCCAUUUCCAGUGACCUCAUGAUCUUCGCUGUGGUUCUGCAGGUCAUCAUGCACUACGAUAGACUGG ...................((((((..((((((......))))..((((((((......))))(((((((((.((((........)))).)).)))))))))))......))..)))))) ( -37.60) >consensus UUUAUCCAACCUAUUUUCACCAGUCGCUCGCCGGAUAUACGGCUACAUGUGGAUCCAUUGCCGGUGACCUCAUGAUCUUCGCUGUGGUCCUGCAGGUCAUCAUGCACUACGAAAGACUGG ...................((((((....((((......))))....(((((...(((....((((((((((.((((........)))).)).)))))))))))..)))))...)))))) (-31.08 = -32.12 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006