| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,503,434 – 9,503,552 |
| Length | 118 |
| Max. P | 0.946328 |
| Location | 9,503,434 – 9,503,552 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.07 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -6.04 |
| Energy contribution | -6.36 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.25 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946328 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9503434 118 - 23771897 AUAACUAUUACAGGUGACUACUUUAGUGGCAAAACAAAGG-CCAGUAAUUGUUGGUCGACCACAUACAUCAAUUACCUCAAUUGCUAGGUAUCUUAUAUAUUUAUACAACCUACGACCC ..(((.(((((((....)).......((((.........)-)))))))).)))(((((...........(((((.....))))).(((((....((((....))))..)))))))))). ( -24.00) >DroSec_CAF1 19913 114 - 1 AUAACGUUUACACAUGCCAGCAACAACAGC--AACAAAGG-CCAGCAAUUGUUGGUUAACCACAUACAUCAAUUAUCUGAAUUGCUAGGUAUCUUAU--AUUACCACAUCUUACGAUCC .............((((((((((.......--......((-(((((....)))))))...........(((......))).))))).))))).....--.................... ( -18.70) >DroSim_CAF1 22074 116 - 1 AUAACGUUUACACAUGCCUACUUAAGUGGCAAAACAAAGG-ACAGCAAUUGUUGGUUAACCACAUACAUCAAUUAUCUGAAUUGCUAGGUAUCUUAU--AUUACCACAACUUACGAUCC ....(((.......((((.((....)))))).....(((.-..(((((((((.((....)))))....(((......))))))))).((((......--..))))....)))))).... ( -20.40) >DroEre_CAF1 19997 109 - 1 AAGGCCUUUACACGUGCCUACUUUUGUGGCAAAACAAAGG--CAGCAGUUGUUGGUAGCCCAAAUACAUCAAUUACCUCAAUUGCUGGGUAUUUUCU--UUUCCCACAACUUA------ ...((((((.....((((.((....))))))....)))))--)((((((((..(((((..............))))).))))))))(((........--...)))........------ ( -30.54) >DroYak_CAF1 22509 111 - 1 AAGGCUUUUACACGUGCCUACUUUCGUGGCAAAACAAAAGCCCAGCUGUUGUUCGCAGACAAAAUACAUUAACUACCUCAAUUGGUAGGUAAUUUCU--UUUCCCACAACUUA------ ..(((((((.....((((.((....))))))....))))))).....(((((..(.(((.(((.(((.....(((((......)))))))).))).)--)).)..)))))...------ ( -25.00) >consensus AUAACGUUUACACGUGCCUACUUUAGUGGCAAAACAAAGG_CCAGCAAUUGUUGGUAGACCACAUACAUCAAUUACCUCAAUUGCUAGGUAUCUUAU__AUUACCACAACUUACGA_CC .........................((((.............((((....))))...................(((((........)))))............))))............ ( -6.04 = -6.36 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:58 2006