Locus 3247

Sequence ID 3L_DroMel_CAF1
Location 9,497,668 – 9,497,760
Length 92
Max. P 0.541703
window5051

overview

Window 1

Location 9,497,668 – 9,497,760
Length 92
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 83.67
Mean single sequence MFE -28.52
Consensus MFE -18.51
Energy contribution -18.90
Covariance contribution 0.39
Combinations/Pair 1.23
Mean z-score -2.21
Structure conservation index 0.65
SVM decision value 0.02
SVM RNA-class probability 0.541703
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9497668 92 - 23771897
--------CUCAGUGGAGCU--AUAGCUAUAUGGCUCCGGAUC-----GGACUCCAGUUUCCGUGGCUCC-CGGAAAACUUGUUAAAGACGAAAGUAACAAGAAAAGU
--------......((((((--(((....)))))))))(((..-----....)))..((((((.(....)-)))))).((((((....((....))))))))...... ( -30.70)
>DroSec_CAF1 14841 93 - 1
--------CUCAGUGGACCU--AUAGCUAUAUGGCUCCGGAUC-----GGACUCCAGUUUCCGUGGCUCCCCGGAAAACUUGUUAAAGACGAAAGUAACAAGAAAAGU
--------......(((.((--(((....))))).)))(((..-----....)))..((((((.((...)))))))).((((((....((....))))))))...... ( -24.40)
>DroSim_CAF1 15218 93 - 1
--------CUCAGUGGAACU--AUAGCUAUAUGGCUCCGGAUC-----GGACUCCAGUUUCCGUGGCUCCCCGGAAAACUUGUUAAAGACGAAAGUAACAAGAAAAGU
--------......(((.((--(((....))))).)))(((..-----....)))..((((((.((...)))))))).((((((....((....))))))))...... ( -24.40)
>DroEre_CAF1 15667 92 - 1
--------CUCGGCGGAGCC--AUAGCUAUAUGGCUCCGGAUC-----GGACUUCAGUUUCCGUGGCUCC-CGGAAAACUUGUUAAAGGCGAAAGUAACAAGAAAAGU
--------.(((((((((((--(((....))))))))))..))-----))((((...((((((.(....)-)))))).((((((....((....))))))))..)))) ( -34.30)
>DroYak_CAF1 16159 92 - 1
--------CUCAGCGGAGCU--AUGGCUAUAUGGCUCCGGAUC-----GGACUCCAGUUUCCGUGGCACC-CGGAAAACUUGUUAAAGACGAAAGUAACAAGAAAAGU
--------......((((((--(((....)))))))))(((..-----....)))..((((((.(....)-)))))).((((((....((....))))))))...... ( -30.50)
>DroAna_CAF1 11594 105 - 1
GCUACAAUAUACAUGGAGCUCCAGACCUCCAGAGCUCCAGACCUUCUAGAACUCCAGUUA-GGGGGCUAC--AGGAAACUUGUUAAAGACGAAAAUAACAAGAAAAGU
.............((((((((..(....)..))))))))..(((..(((..((((.....-)))).))).--)))...(((((((..........)))))))...... ( -26.80)
>consensus
________CUCAGUGGAGCU__AUAGCUAUAUGGCUCCGGAUC_____GGACUCCAGUUUCCGUGGCUCC_CGGAAAACUUGUUAAAGACGAAAGUAACAAGAAAAGU
.............(((((((............)))))))..................((((((.(....).)))))).((((((....((....))))))))...... (-18.51 = -18.90 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:57 2006