| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,496,756 – 9,496,850 |
| Length | 94 |
| Max. P | 0.617960 |
| Location | 9,496,756 – 9,496,850 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 83.06 |
| Mean single sequence MFE | -19.36 |
| Consensus MFE | -15.07 |
| Energy contribution | -14.97 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.617960 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9496756 94 + 23771897 AGUGGAUGGAAAAGCGUGUGGGUUUUAGGUGCGUGUGCGCAGCGGAGUGUGU--GAGACACAAAGCUGAAGAAAAACCAAAAAUAGAAAAA-------AUCUA ..(((((.............((((((.(.((((....)))).)((..((((.--....))))...)).....)))))).............-------))))) ( -20.27) >DroSim_CAF1 14303 100 + 1 AGUGGAUGGAAAAGCGUGUGGGU-UUAGGUGCGUGUGCGCAGCGGAGUGUGU--GAGACACAAAGCUGAAGAAAAACCAAAAAAAAAAAAACAAACACAUUGA .(((..((.....(((..((.((-......)).))..)))(((....((((.--....))))..)))........................))..)))..... ( -22.40) >DroYak_CAF1 15194 94 + 1 AGUGGAUGGAAAAGCGUGUGGGU-CUAGGUGCGUGUGCGCAGCCGAGUGUGGAUGGGAUACAAAGCAGAAGAAAAACAAAAAAG-GAAA-------ACAUUGC .............((((((...(-((.((((((....)))).))(..((((.......))))...).................)-))..-------))).))) ( -15.40) >consensus AGUGGAUGGAAAAGCGUGUGGGU_UUAGGUGCGUGUGCGCAGCGGAGUGUGU__GAGACACAAAGCUGAAGAAAAACCAAAAAAAGAAAAA_____ACAUUGA ....((((.....(((..((.((.......)).))..))).((....((((.......))))..))...............................)))).. (-15.07 = -14.97 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:56 2006