| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,492,986 – 9,493,076 |
| Length | 90 |
| Max. P | 0.686304 |
| Location | 9,492,986 – 9,493,076 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 83.63 |
| Mean single sequence MFE | -26.84 |
| Consensus MFE | -19.82 |
| Energy contribution | -21.46 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9492986 90 - 23771897 -------UCCCAUUGAGUCGAGUUCCUUUGCCGUCCAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCACA----------CAGCGCGACUCCUUUUUUUGGGGGG -------......((((((((........((((.((((.....)))).....))))......))))))))..----------........(((((......))))). ( -23.34) >DroSec_CAF1 10218 89 - 1 -------UCCCAUCGAGUCGAGUUCCUUUGCCGGCCAUUUCUUAAGGCCAUUUGGCUUUUUAUUGACUCACA----------CAGCGCGACUCCUUU-UUUGGGGGG -------.(((...(((((((........(((((((.........))))....)))......)))))))...----------..........((...-...))))). ( -25.64) >DroSim_CAF1 10590 89 - 1 -------UCCCAUCGAGUCGAGUUCCUUUGCCGGCCAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCACA----------CAGCGCGACUCCUUU-UUUGGGGGG -------.(((...(((((((........(((((((((.....))))))....)))......)))))))...----------..........((...-...))))). ( -28.94) >DroEre_CAF1 10010 84 - 1 -------UCCCAUCGAGUCGAGUUCCUUUGCCGGCCAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCA------------CAGCGCGACUCCUUU-UGGG---GG -------(((((..((((((.((......(((((((((.....))))))....))).......((.....------------)))).))))))....-))))---). ( -27.70) >DroYak_CAF1 11525 90 - 1 CCCCAUUUCCCAUCGAGUCGAGUUUCUUUGC----CAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCA------------CAGCGCGACUCCUUU-UUGGGGAGG .....(((((((..((((((.(((.....((----(((.....)))))....((..((......))..))------------.))).))))))....-.))))))). ( -23.80) >DroAna_CAF1 7024 99 - 1 -------UCGAAUCGAGGCGAGUUCCUUUGCCGGCCAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCCGAGCAGAGUCAGCAGCGCUACUCCGGU-UUUCGGUUA -------...((((((((((((....))))))((((((.....))))))...((((......(((((((......)))))))....)))).......-..)))))). ( -31.60) >consensus _______UCCCAUCGAGUCGAGUUCCUUUGCCGGCCAUUUCUUAUGGCCAUUUGGCUUUUUAUUGACUCACA__________CAGCGCGACUCCUUU_UUUGGGGGG ..............(((((((........(((((((((.....))))))....)))......))))))).....................(((((......))))). (-19.82 = -21.46 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:53 2006