Locus 3243

Sequence ID 3L_DroMel_CAF1
Location 9,492,623 – 9,492,736
Length 113
Max. P 0.838023
window5046

overview

Window 6

Location 9,492,623 – 9,492,736
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 90.81
Mean single sequence MFE -17.09
Consensus MFE -13.68
Energy contribution -14.05
Covariance contribution 0.37
Combinations/Pair 1.12
Mean z-score -1.99
Structure conservation index 0.80
SVM decision value 0.74
SVM RNA-class probability 0.838023
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9492623 113 + 23771897
CUUUCCUUUGCUUAUUGAAGCAUUCAAGGCUCCAAUUAGUUUGAGAUGCCUUGACCACAGUUUCAAACCACAAUUUACUUAUCUCCAUCUUAAGCACCUCCCAUUCCACCAAU
........(((((((((((((..((((((((((((.....))).)).))))))).....)))))))........................))))))................. ( -21.05)
>DroSec_CAF1 9860 112 + 1
UUUUCCUUUGCUUAUCGAAGCAUUCAAGGCUCCAAUUAGUUUGCGAUGCUCUGACCACAGCC-CUUGACACAAUUUACUUAUCUCCAUCUUAAGCACCUCUCAUUCCACCAAU
........(((((((((.((((((..(((((......)))))..)))))).)))...(((..-.))).......................))))))................. ( -13.80)
>DroSim_CAF1 10228 112 + 1
UUUUCCUUUGCUUAUCGAAGCAUUCAAGGCUCCAAUUAGUUUGCGAUGCCUUGACCACAGCC-CUUGCCACAAUUUACUUAUCUCCAUCUUAAGCACCUCUCAUUCCACCAAU
........((((((..((.....((((((((((((.....))).)).))))))).....((.-...))...................)).))))))................. ( -18.60)
>DroYak_CAF1 11157 112 + 1
UUUUUCUUUGCUCACCCAAGCAUUCAAGGCUGCAAUUAGUUUGAGGUGCCUUGACCACAGCC-CUUGCCACAAUUUACUUAUCUCCAUCUUAAGCACCUCCCAUUCCACUAAU
........((((......))))....((((((....))))))(((((((..((....))((.-...)).........................)))))))............. ( -14.90)
>consensus
UUUUCCUUUGCUUAUCGAAGCAUUCAAGGCUCCAAUUAGUUUGAGAUGCCUUGACCACAGCC_CUUGCCACAAUUUACUUAUCUCCAUCUUAAGCACCUCCCAUUCCACCAAU
........(((((....))))).((((((((((((.....))).)).)))))))........................................................... (-13.68 = -14.05 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006