Locus 3240

Sequence ID 3L_DroMel_CAF1
Location 9,484,017 – 9,484,136
Length 119
Max. P 0.965294
window5039

overview

Window 9

Location 9,484,017 – 9,484,136
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.00
Mean single sequence MFE -31.56
Consensus MFE -24.24
Energy contribution -24.16
Covariance contribution -0.08
Combinations/Pair 1.11
Mean z-score -2.32
Structure conservation index 0.77
SVM decision value 1.58
SVM RNA-class probability 0.965294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9484017 119 - 23771897
-UAUGGUGUUCUUCUUCCGUUUGUUUUCACAGUGUCCGCAAGCAGGUGGUCAACAUCCCGUCGUUCGUCGUGCGCCUGGACUCCCAGAAGCACAUCGACUUCUCCCUGAAGUCGCCCUUC
-...((((((...((.((((((((...(.....)...)))))).)).))..))))))............((((..((((....))))..))))..(((((((.....)))))))...... ( -34.00)
>DroPse_CAF1 369 111 - 1
-UAUCUUCUGCUUUCCCC------AUCU--AGUGUGCGCAAGCAAGUUGUCAACAUCCCAUCGUUCGUUGUGCGCCUGGACUCCCAGAAGCACAUCGACUUCUCUCUGAAGUCGCCCUUC
-.......((((((....------.(((--((.((((((((((.....)).(((........)))..)))))))))))))......))))))...(((((((.....)))))))...... ( -29.40)
>DroAna_CAF1 1343 110 - 1
-UCUCAU-UUCUUCUU--------AUCUACAGUGUGCGCAAGCAGGUGGUCAACAUCCCAUCGUUUGUGGUGCGUCUGGACUCCCAGAAGCACAUCGACUUCUCCCUGAAGUCGCCCUUC
-......-........--------............(((((((.(((((........))))))))))))((((.(((((....))))).))))..(((((((.....)))))))...... ( -37.20)
>DroPer_CAF1 369 111 - 1
-UAUCUUCUGCUCUCCCC------AUCU--AGUGUGCGCAAGCAAGUUGUCAACAUCCCAUCGUUCGUUGUGCGCCUGGACUCCCAGAAGCACAUCGACUUCUCUCUGAAGUCGCCCUUC
-........((.......------...(--((..(((....)))..))).................(.(((((..((((....))))..))))).)((((((.....))))))))..... ( -28.60)
>DroWil_CAF1 859 109 - 1
CCAUCUUUCUCUCUCC---------UUU--AGUGUGCGCAAGCAAGUCGUCAAUAUUCCAUCAUUCGUGGUGCGUUUGGACUCCCAGAAGCACAUUGACUUCUCGCUGAAAUCACCCUUC
................---------(((--(((((((....)))((..((((((....(((.....)))((((.(((((....))))).))))))))))..))))))))).......... ( -28.60)
>consensus
_UAUCUUCUUCUUUCCCC______AUCU__AGUGUGCGCAAGCAAGUGGUCAACAUCCCAUCGUUCGUGGUGCGCCUGGACUCCCAGAAGCACAUCGACUUCUCCCUGAAGUCGCCCUUC
..................................(((....))).........................((((..((((....))))..))))..(((((((.....)))))))...... (-24.24 = -24.16 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:46 2006