Locus 3239

Sequence ID 3L_DroMel_CAF1
Location 9,483,840 – 9,483,937
Length 97
Max. P 0.896884
window5038

overview

Window 8

Location 9,483,840 – 9,483,937
Length 97
Sequences 3
Columns 103
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -20.37
Consensus MFE -13.63
Energy contribution -14.30
Covariance contribution 0.67
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.67
SVM decision value 0.99
SVM RNA-class probability 0.896884
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9483840 97 + 23771897
-----UAUUUUUACAUUUAUUUGUGUAAAGCAAACGGAUUUUUAUC-AAGUCUGCGCCAUGUAUUUGUCUUGGCUACAGCUGGCUACCACUGCUUAGUCCUCC
-----......(((((......)))))(((((..(((((((.....-))))))).((((.((....((....))....))))))......)))))........ ( -19.30)
>DroPse_CAF1 193 96 + 1
UUUGGCCAUUUUACAUUUAU-UGUGUAAAACAAAGUUUAAACUAUAAAAUUUUGCGCCAUAUAGUCGAAUUGGC------AGGCUACCAUAGCUUAGUCCUCA
..(((((.((((((((....-.))))))))((((((((........)))))))).((((...........))))------.)))))................. ( -20.90)
>DroPer_CAF1 193 96 + 1
UUUGGCCAUUUUACAUUUAU-UGUGUAAAACAAAGUUUAAACUAUAAAAUUUUGCGCCAUAUAGUCGAAUUGGC------AGGCUACCAUAGCUUAGUCCUCA
..(((((.((((((((....-.))))))))((((((((........)))))))).((((...........))))------.)))))................. ( -20.90)
>consensus
UUUGGCCAUUUUACAUUUAU_UGUGUAAAACAAAGUUUAAACUAUAAAAUUUUGCGCCAUAUAGUCGAAUUGGC______AGGCUACCAUAGCUUAGUCCUCA
........((((((((......))))))))((((((((........)))))))).((((...........)))).......(((((........))))).... (-13.63 = -14.30 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:45 2006