Locus 3238

Sequence ID 3L_DroMel_CAF1
Location 9,482,610 – 9,482,727
Length 117
Max. P 0.643199
window5037

overview

Window 7

Location 9,482,610 – 9,482,727
Length 117
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 90.12
Mean single sequence MFE -28.48
Consensus MFE -23.53
Energy contribution -24.17
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.41
Structure conservation index 0.83
SVM decision value 0.23
SVM RNA-class probability 0.643199
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9482610 117 - 23771897
UUAAAUGAUCAACAGAAUACCCCA-AAUUUUGUCAAUAACUAAGGGGUGUAAAUUGAAAGAAAGGGACUUUCAAAGCACUUACGUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
....((((((......(((((((.-..................))))))).....(((((((.(..(((..(.(((.((....)).))).)..)))..))))))))))))))...... ( -30.71)
>DroSec_CAF1 19734 117 - 1
UUAACCGAUCAACAGCAUACCCCA-AAUUUUGUCAACAACUAAGGGGUGUAAAUUCAAAGAAAGGAACUUUCAAGGCACUUACGUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
...(((((........(((((((.-....(((....)))....)))))))........(((((((((((..(.(((.((....)).))).)..))))))))))))))))......... ( -30.10)
>DroSim_CAF1 20013 117 - 1
UUAACCGUUCAACAGCAUACCCCA-AAUUUUUGCAACAACUAAGGGGUGUAAAUUCAAAGAAAGGAACUUUCAAGGCACUUACGUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
...((((.........(((((((.-..................))))))).......((((((((((((..(.(((.((....)).))).)..))))))))))))))))......... ( -27.61)
>DroEre_CAF1 19635 117 - 1
UUAGCCGUUCAACAGCAUACCCCA-AAUUUUCUCAACAAUUAAGGGGUGUAAAUUAUAAGAAAGGGUCUUUCCAGGCACUUACAUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
...(((..........(((((((.-..................))))))).............(((....))).)))....((((...(((..((......))..)))..)))).... ( -23.21)
>DroYak_CAF1 19937 118 - 1
UUUGUCGAUCAACAGCAUACCCCGCAAUUUUCUCCACAUUUAAGGGGUACAAAUUAAAAGAAAGGGACUUUCGAGGCACUUACAUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
......((((.......((((((....................))))))........(((((((..(((..(((((..........)))))..)))..))))))).))))........ ( -30.75)
>consensus
UUAACCGAUCAACAGCAUACCCCA_AAUUUUCUCAACAACUAAGGGGUGUAAAUUAAAAGAAAGGGACUUUCAAGGCACUUACGUAUUUCGGGGGUUUCUUUUUUCGGUCAUGUUUUG
......((((......(((((((....................))))))).......((((((((((((..(.(((.((....)).))).)..)))))))))))).))))........ (-23.53 = -24.17 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:44 2006