Locus 3237

Sequence ID 3L_DroMel_CAF1
Location 9,480,608 – 9,480,714
Length 106
Max. P 0.557868
window5036

overview

Window 6

Location 9,480,608 – 9,480,714
Length 106
Sequences 4
Columns 106
Reading direction forward
Mean pairwise identity 93.55
Mean single sequence MFE -18.98
Consensus MFE -16.14
Energy contribution -15.95
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.52
Structure conservation index 0.85
SVM decision value 0.05
SVM RNA-class probability 0.557868
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9480608 106 + 23771897
AUAAAUUUCCCACAAUCUCAAUUGAAAUUAUUUUUAUUAACAAUUUCCUGGGACAUAAAAUUAAUUUGAAUUGUUAGAUUUUGGGCGCAAACUGUUAAGUCACAGA
........((((.((((((((((.((((((.(((((((..((......))..).)))))).)))))).)))))..))))).))))......((((......)))). ( -23.00)
>DroSec_CAF1 17681 106 + 1
AUGAAGUUCCCACAAUCUCAAUUGAAAUUAUUUUUAUUAACAAUUUCCUGGGACAUAAAAUUAAUUUGAAUUGUUAGAUUUUGGCCGCAAAUAGUUAAGUCAUAGA
.....((..(((.((((((((((.((((((.(((((((..((......))..).)))))).)))))).)))))..))))).)))..)).................. ( -19.00)
>DroSim_CAF1 17960 106 + 1
AUAAAUUUCCCACAAUCUCAAUUGAAAUUAUUUUUAUUAACAAUUUCCUGGGACAUAAAAUUAAUUUGGAUUGUUAGAUUUUGUCCGCAAAUAGUUAAGUCAUAGA
..........((.((((((((((.((((((.(((((((..((......))..).)))))).)))))).)))))..))))).))....................... ( -14.50)
>DroYak_CAF1 17849 106 + 1
AUGAACUUCGCACAAUCUCAAUUGAAAUUAUUUUUAUUAACAAUUUCCUGUGACAUAAAAUUAAUUUGAAUUGUUAGAUUUUGCCCGCAAAUAGUUAAAUCAUGGA
((((.....(((.((((((((((.((((((.((((((..(((......)))...)))))).)))))).)))))..))))).)))..((.....))....))))... ( -19.40)
>consensus
AUAAAUUUCCCACAAUCUCAAUUGAAAUUAUUUUUAUUAACAAUUUCCUGGGACAUAAAAUUAAUUUGAAUUGUUAGAUUUUGGCCGCAAAUAGUUAAGUCAUAGA
.........(((.((((((((((.((((((.((((((...((......))....)))))).)))))).)))))..))))).)))...................... (-16.14 = -15.95 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:43 2006