Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,470,503 – 9,470,623 |
Length | 120 |
Max. P | 0.847939 |
Location | 9,470,503 – 9,470,623 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.56 |
Mean single sequence MFE | -39.30 |
Consensus MFE | -16.00 |
Energy contribution | -16.73 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.30 |
Mean z-score | -2.30 |
Structure conservation index | 0.41 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9470503 120 + 23771897 AACGGCACCAGCAUUAUGCAAAUGAGCAUGCGCAGCGACACUGCCGUUCCCGUCCAAUAGGAAAUCAACUGCUCAAAGUUCGAGGCCACAAUAACCGUGUACACCGAGCAGGUGCCAAAG ...((((((.((.....))...((((((.(.((((.....)))))(((....(((....)))....)))))))))..(((((.(..(((.......)))..)..))))).)))))).... ( -39.20) >DroVir_CAF1 8059 120 + 1 AAUGGCACGAGCAUUAUGCAAAUGAUGACACGCGACUCGAUUUCACAAUCAAACCAAUGCUCAAGCACCUGCUCAAAGUUCUUGGCCACAAUAACUGUAUACACAGAGCAGGUGCCAAAG ..((((..(((((((.(((............)))....((((....)))).....)))))))....((((((((..((((.(((....))).))))((....)).))))))))))))... ( -35.30) >DroPse_CAF1 6473 120 + 1 AGUGGCACCAACAGGGAGCAGAUGAGCAGACGCGAAGACACUUCCGUUCCCGUCCAGUGCUCGAUCAACUGUUCGAAAUUCUUAGCCACAAUCACGGUGUACACCGAACAGGUGCCGAAG .(((((.((....))((((((.((((((((((.((((.......).))).))))...)))))).....))))))..........))))).....(((....((((.....)))))))... ( -37.20) >DroEre_CAF1 8538 120 + 1 AAGGGCACCAGCAUUAUGCAAAUGAGCAUGCGCAGCGACACCGGUGAUCCCGUCCAGUGGGAAAUCAACUGCUCAAAGUUCGAGGCCACAAUUACCGUGUACACCGAGCAGGUGCCAAAG ...((((((.((.....))...((((((....((.((....)).)).(((((.....))))).......))))))..(((((.(..(((.......)))..)..))))).)))))).... ( -39.50) >DroMoj_CAF1 8228 120 + 1 AAUGGCACGAGCAGUAUACAGAUGAUUACACGCGGCUCAAUGUCGCGUCCCGUCCAAUGCACCAGCACCUGCUCAAAGUUCUUGGCCACGAUGACCGUGUAGACGGAACAGGUGCCAAAA ..((((((((((((......((((.....(((((((.....)))))))..))))...(((....))).))))))...(((((....((((.....)))).....)))))..))))))... ( -44.00) >DroPer_CAF1 8207 120 + 1 AGUGGCACCAACAGGGAGCAGAUGAGCAGACGCGAGGACACUUCCGUUCCCGUCCAGUGCUCGAUCAACUGUUCGAAAUUCUUAGCCACAAUCACGGUGUACACCGAACAGGUGCCGAAG .(((((.((....))((((((.((((((((((.(.((((......)))))))))...)))))).....))))))..........))))).....(((....((((.....)))))))... ( -40.60) >consensus AAUGGCACCAGCAGUAUGCAAAUGAGCACACGCGACGACACUUCCGUUCCCGUCCAAUGCUCAAUCAACUGCUCAAAGUUCUUGGCCACAAUAACCGUGUACACCGAACAGGUGCCAAAG ...((((((.............((((((.........................................))))))..(((((....(((.......))).....))))).)))))).... (-16.00 = -16.73 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:40 2006