Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,459,509 – 9,459,603 |
Length | 94 |
Max. P | 0.894445 |
Location | 9,459,509 – 9,459,603 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 73.27 |
Mean single sequence MFE | -23.59 |
Consensus MFE | -16.56 |
Energy contribution | -16.76 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.28 |
Structure conservation index | 0.70 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894445 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9459509 94 + 23771897 AACCAUAAGGCAGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC-GGCGGCGCACGAAAGAUUCAGGCACAGAUAA-AGAUAAGGA-----U- ..((.....((.(((((...((...((((((..((....))..))))))..))-.))))))).(....)................-......)).-----.- ( -23.90) >DroVir_CAF1 19398 102 + 1 CAGCACAAGGCGGCCGUCAAGAAAAAGUAGCAGCGUCGGCGUCGCUACUAAACCAGCAGCGCAAUAAAGAUUAAGGAGGCGAUAAACGAUCCAAAACAUUUU ..((.(..(((....))).......((((((.(((....))).)))))).........).))............(((..((.....)).))).......... ( -21.60) >DroPse_CAF1 13298 86 + 1 CACCACAAGGCGGCCGUAAAGAAAAAGUAGCACCGUCGGCGUCGUUACUAAUCUGGCGGCGCU---------ACCCCACAGAUAU-CCAUACGGC-----A- (.((....)).)((((((........(((((.(((((((.............))))))).)))---------))......(....-.).))))))-----.- ( -26.32) >DroEre_CAF1 13859 95 + 1 AACCACAAGGCAGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC-GGCGGCGCACGAAAGAUUCAGGCACAGAUAAAAGAUACGGA-----U- ..((.....((.(((((...((...((((((..((....))..))))))..))-.))))))).(....).......................)).-----.- ( -24.00) >DroAna_CAF1 12673 81 + 1 CAUCACAAGGCGGCGGUUAAAAAAAAGUAGCAUCGUCGGCGUCGUUACUAAAA-GGCGGCGCAGGAUA----------UAGAUA----CUACGAC-----U- .(((......(((((((((........))))..)))))((((((((.......-))))))))......----------..))).----.......-----.- ( -19.40) >DroPer_CAF1 14703 86 + 1 CACCACAAGGCGGCCGUAAAGAAAAAGUAGCACCGUCGGCGUCGUUACUAAUCUGGCGGCGCU---------ACCCCACAGAUAU-CCAUACGGC-----A- (.((....)).)((((((........(((((.(((((((.............))))))).)))---------))......(....-.).))))))-----.- ( -26.32) >consensus CACCACAAGGCGGCCGUAAAGAAAAAGUAGCAUCGUCGGCGUCGUUACUAAUC_GGCGGCGCA_GAAA____AAGGCACAGAUAA_CGAUACGGA_____U_ .........((.(((((........((((((..((....))..))))))......)))))))........................................ (-16.56 = -16.76 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:39 2006