| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,454,684 – 9,454,790 |
| Length | 106 |
| Max. P | 0.921998 |
| Location | 9,454,684 – 9,454,790 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -25.50 |
| Energy contribution | -25.14 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.27 |
| Mean z-score | -3.48 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921998 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9454684 106 + 23771897 ----AACAUUCG---AAAGUCGACUCCGACGAGGAGGAGGACUUUCUCAUCAACGAGGAGCUAAACGAAACGAAGCGGAAGCUAGAGAAGAGCUUUAGCGACUCGGAUGACGA ----.......(---((((((..((((.....))))...)))))))(((((..((((..(((((((.......(((....)))........).))))))..)))))))))... ( -38.56) >DroVir_CAF1 14277 110 + 1 CAGCAACAAGAA---AAAGACGACUCCGAUGCGGAGGAGGAUUUUUUAAUCAACGAGGAGCUAAACGAAACGAAGCGCAAGCUGGAAAAGAGUUUUAGCGAUUCCGAUGAUGA .........(((---(((..(..(((((...)))))..)..)))))).((((.((((..(((((((.......(((....)))........).))))))..)).)).)))).. ( -29.66) >DroGri_CAF1 7714 110 + 1 CAGCAGCAACAA---AAAGUCGACUCCGAUGCCGAGGAGGAUUUUUUAAUCAACGAGGAGCUAAACGAAACGAAGCGCAAGCUCGAGAAGAGUUUCAGUGACUCGGAUGAUGA ..........((---((((((..((((........)))))))))))).((((.((((..(((((((....(((.((....)))))......)))).)))..))))..)))).. ( -32.00) >DroWil_CAF1 11164 109 + 1 ----AACAGUCAAAGAAAGUCGAUUCCGAUGAGGAGGAAGAUUUUCUUAUCAAUGAGGAGCUGAAUGAAACCAAGCGAAAGCUGGAAAAGAGUUUCAGUGACUCGGAUGAUGA ----........(((((((((..((((.....))))...)))))))))((((.((((..((((((.....(((.((....)))))........))))))..))))..)))).. ( -36.92) >DroAna_CAF1 7813 106 + 1 ----AACAUUCA---AAAGUCGACUCCGACGAGGAGGAGGACUUUCUAAUCAACGAGGAGCUGAACGAGACGAAGCGAAAGCUGGAGAAGAGCUUCAGUGACUCGGACGACGA ----........---...((((..(((((..((((((....))))))..))...(((..(((((((.......(((....)))........).))))))..)))))))))).. ( -33.66) >DroPer_CAF1 9523 106 + 1 ----AACAGUCA---AAAGUCGACUCCGACGAGGAGGAAGACUUUCUAAUCAACGAGGAGCUGAACGAAACGAAACGCAAUCUGGAGAAGAGUUUCAGCGACUCGGAUGACGA ----....((((---((((((..((((.....))))...))))))........((((..((((((((........))...(((.....)))..))))))..))))..)))).. ( -33.90) >consensus ____AACAAUCA___AAAGUCGACUCCGACGAGGAGGAGGACUUUCUAAUCAACGAGGAGCUAAACGAAACGAAGCGCAAGCUGGAGAAGAGUUUCAGCGACUCGGAUGACGA ...............((((((..((((.....))))...))))))....((..((((..(((((((.......(((....)))........).))))))..))))...))... (-25.50 = -25.14 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:38 2006