Locus 3232

Sequence ID 3L_DroMel_CAF1
Location 9,454,336 – 9,454,447
Length 111
Max. P 0.988214
window5030

overview

Window 0

Location 9,454,336 – 9,454,447
Length 111
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 95.32
Mean single sequence MFE -34.77
Consensus MFE -34.17
Energy contribution -33.65
Covariance contribution -0.52
Combinations/Pair 1.19
Mean z-score -1.31
Structure conservation index 0.98
SVM decision value 2.11
SVM RNA-class probability 0.988214
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9454336 111 + 23771897
AAGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAGGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((...(((........)))......(((((...(((...(.((((((((((((....)).)))))))))).)..)))...)))))...))))).. ( -33.80)
>DroSec_CAF1 8661 111 + 1
AAGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAGGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((...(((........)))......(((((...(((...(.((((((((((((....)).)))))))))).)..)))...)))))...))))).. ( -33.80)
>DroSim_CAF1 6974 111 + 1
AAGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAAGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((...(((........)))......(((((...(((...(.((((((((((((....)).)))))))))).)..)))...)))))...))))).. ( -34.10)
>DroEre_CAF1 8661 111 + 1
AAGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAGGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((...(((........)))......(((((...(((...(.((((((((((((....)).)))))))))).)..)))...)))))...))))).. ( -33.80)
>DroYak_CAF1 8663 111 + 1
AGGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAGGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((...(((........)))......(((((...(((...(.((((((((((((....)).)))))))))).)..)))...)))))...))))).. ( -33.80)
>DroAna_CAF1 7474 111 + 1
AGGAGAUGGAGAAGAUGGAGAACGAGAUCAAGCGAAAUGCGGCGGGAAAGUUAAACGUGCCGGAGUCCACGACGGUGUCUCCGGCAGGAAAGCCCUCCCGUAAGCCGUCGC
.............(((((.............((.....)).((((((..(((...(.((((((((..(((....))).)))))))).)..)))..))))))...))))).. ( -39.30)
>consensus
AAGAAAUGGAAAAGAUGGAGAACGAGAUCAAGCGUAAUGCGGCGGGAAAGUUAAACGUGCCGGAGGCCUCGACGGUGCUUUCGGCAGGCAAAUCAACCCGUAAGCCGUCGC
.............(((((.............((.....)).(((((...(((...(.(((((((((((......).)))))))))).)..)))...)))))...))))).. (-34.17 = -33.65 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006