| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,440,426 – 9,440,517 |
| Length | 91 |
| Max. P | 0.853374 |
| Location | 9,440,426 – 9,440,517 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.50 |
| Mean single sequence MFE | -22.14 |
| Consensus MFE | -14.56 |
| Energy contribution | -15.78 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.853374 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9440426 91 + 23771897 ----------UUUCCGAC----UCUCUCGAUUUCGUCUUGCAUGUGUGUGAGUGCGUCUGUAUUUUAUCAACACAUUUUAUACAUGUCUCUAUCGGAGCGACCAU ----------.((((((.----.....((....))....(((((((((.(((((.((.((........)))).)))))))))))))).....))))))....... ( -19.60) >DroPse_CAF1 11638 84 + 1 ----------UUUCUCACAAAGUCUCUC--UGUCG----GCGUGUGUGUGUGUGUGUGUACAUUUUAUCAACACACUUUAUACAUGUCUCUAUCGGAGUG----- ----------...............(((--((..(----(((((((((...((((((.............))))))..)))))))))).....)))))..----- ( -24.02) >DroSec_CAF1 10112 91 + 1 ----------UUUCCGAC----UCUCUCGAUUUCGUAUUGCAUAUGUGUGAGUGCGUCUGUAUUUUAUCAACACAUUUUAUACAUGUCUCUAUCGGAGCGACCAU ----------........----....(((.(((((((..(.(((((((((((((.((.((........)))).)).))))))))))))..)).)))))))).... ( -17.30) >DroEre_CAF1 10296 91 + 1 ----------UUUCCGAC----UCUCUCGAUUUCGUCUUGCAUGUGUGCGAGUGUGCCUGUAUUUUAUCAACACAUUUUAUACAUGUCUCUAUCGGAGCGACCAU ----------.((((((.----.....((....))....(((((((((.(((((((..((........)).)))))))))))))))).....))))))....... ( -21.70) >DroYak_CAF1 10263 95 + 1 UCCU------UUUCCGAC----UCUCUCGAUUUCGUCUUGCAUGUGUGCGAGUGUGUCUGUAUUUUAUCAGCACAUUUUAUACAUGUCUCUAUCGGAGCGACCAU ....------.((((((.----.....((....))....(((((((((.(((((((.(((........))))))))))))))))))).....))))))....... ( -25.90) >DroAna_CAF1 10139 99 + 1 UCCUCUUCCUCUUCCGAC----UCUCUCGUUU-CGGAGGUUAUA-GUGUGUGUGUGUGUGUAUUUUAUCAACACAUUUUAUACAUGUCUCUAUUGGAGCGACCCU ...((((((.(((((((.----.(....)..)-)))))).....-(((((((.((((((...........))))))..))))))).........)))).)).... ( -24.30) >consensus __________UUUCCGAC____UCUCUCGAUUUCGUCUUGCAUGUGUGUGAGUGUGUCUGUAUUUUAUCAACACAUUUUAUACAUGUCUCUAUCGGAGCGACCAU ...........((((((..........((....))....(((((((((.((((((((.((........))))))))))))))))))).....))))))....... (-14.56 = -15.78 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:34 2006