Locus 3229

Sequence ID 3L_DroMel_CAF1
Location 9,439,806 – 9,439,902
Length 96
Max. P 0.970586
window5026

overview

Window 6

Location 9,439,806 – 9,439,902
Length 96
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 94.70
Mean single sequence MFE -26.44
Consensus MFE -25.30
Energy contribution -26.18
Covariance contribution 0.88
Combinations/Pair 1.11
Mean z-score -1.46
Structure conservation index 0.96
SVM decision value 1.66
SVM RNA-class probability 0.970586
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9439806 96 - 23771897
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUCGGAAAAUGUGU----GUGUGCGUGAGCUUAAGAGCAAGAGGGCG
..(((.((((((((((((..((.(((((((((....((((((((.(..........).)))))).))----))).)))))))).))))))))))))))). ( -25.10)
>DroSec_CAF1 9485 100 - 1
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUUGGAGAAUGUGUGUCUGUGUGCGUGAGCUUAAGAGCAAGAGGGCG
..(((.((((((((((((..((.(((((((((..((((((((((.((........)).)))))).))))..))).)))))))).))))))))))))))). ( -30.70)
>DroSim_CAF1 9892 100 - 1
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUUGGAGAAUGUGUGUCUGUGUGCGUGAGCUUAAGAGCGAGAGGGCG
..(((.((((((((((((..((.(((((((((..((((((((((.((........)).)))))).))))..))).)))))))).))))))))))))))). ( -30.40)
>DroEre_CAF1 9649 100 - 1
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUUGGAGAAUGUUUGUCUGUGUGCGUGAGCUCAAGAGAGAGAGGGCG
.....((((((.((((((..((.((((((((((((...((((((.((........)).)))))).)))...))).)))))))).))))))...)))))). ( -23.60)
>DroYak_CAF1 9633 100 - 1
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUCGGAGAAUGUGUGCCUGUGUGCGUGAGCUUAGGAGAGAGAGGGCG
.....(((((..(((((.(....(((((((((...(((((((((.(..........).)))))).)))...))).))))))....).)))))..))))). ( -22.40)
>consensus
UUGUUGUUCUUGCUUUUGUUGUAUUAUGCCAUCAAUGCCAUUUUGUACAUAGUUUUGGAGAAUGUGUGUCUGUGUGCGUGAGCUUAAGAGCGAGAGGGCG
..(((.((((((((((((..((.(((((((((..((((((((((.((........)).)))))).))))..))).)))))))).))))))))))))))). (-25.30 = -26.18 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:34 2006