Locus 3227

Sequence ID 3L_DroMel_CAF1
Location 9,437,860 – 9,437,951
Length 91
Max. P 0.500000
window5024

overview

Window 4

Location 9,437,860 – 9,437,951
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 80.36
Mean single sequence MFE -31.82
Consensus MFE -19.97
Energy contribution -21.27
Covariance contribution 1.30
Combinations/Pair 1.19
Mean z-score -1.42
Structure conservation index 0.63
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9437860 91 - 23771897
CGUGGAGUGUCGCAGAUAUUUGAUAAACUCAAAGGAUCCAUCGAAGUGCUGGGGCACUGAGCCCGCU------GUCGAGGCGGUGGAUUGAUGGCCA
....((((....(((....)))....))))...((..((((((((((((....)))))....(((((------((....))))))).))))))))). ( -32.20)
>DroPse_CAF1 8755 73 - 1
CGUGGAGUGGCGCAGAUAUUUUAUAAACUCGAAGGAACCAUCAAAGUGCUGGGGCACCGAUACCGAU------CCC------------------CCA
...((((((.(.(((.((((((......((....))......))))))))).).)))((....)).)------)).------------------... ( -15.80)
>DroSec_CAF1 7614 91 - 1
CGUGGAGUGUCGCAGAUAUUUGAUAAACUCAAAGGAUCCAUCGAAGUGCUGGGGCACUGAGCCCGAU------GCCGAGGCGGUGGAUUGAUGGCCA
..(((..((((.......(((((.....))))).((((((((..(((((....)))))..(((((..------..)).))))))))))))))).))) ( -29.70)
>DroSim_CAF1 7988 91 - 1
CGUGGAGUGUCGCAGAUAUUUGAUAAACUCAAAGGAUCCAUCGAAGUGCUGGGGCACUGAGCCCGCU------GCCGAGGCGGUGGAUUGAUGGCCA
....((((....(((....)))....))))...((..((((((((((((....)))))....(((((------((....))))))).))))))))). ( -34.30)
>DroEre_CAF1 7741 91 - 1
CGUGGAGUGUCGCAGAUAUUUGAUAAACUCAAAGGAUCCAUCGAAGUGCUGGGGCACUGAGCCCGCA------GCAGAGGCGGUGGAUUGAUGGCCA
..(((..((((.......(((((.....))))).(((((((((...(((((((((.....)))).))------)))....))))))))))))).))) ( -34.60)
>DroAna_CAF1 7424 97 - 1
CGCCGAAUGCCGUAGGUAUUUGAUGAACUCGAAGGAGCCAUCGAAGUGUUGGGGCACCGAUCCUGCUGCUGCUGCUGCGGCGGCGGAGGCAUGGCCG
.(((..(((((.......(((((((..(((....))).)))))))..(((((....))))).((((((((((....)))))))))).)))))))).. ( -44.30)
>consensus
CGUGGAGUGUCGCAGAUAUUUGAUAAACUCAAAGGAUCCAUCGAAGUGCUGGGGCACUGAGCCCGCU______GCCGAGGCGGUGGAUUGAUGGCCA
.((((((((((.(((...((((((....((....))...))))))...))).))))))....))))............(((.((......)).))). (-19.97 = -21.27 +   1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:31 2006