| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,425,738 – 9,425,831 |
| Length | 93 |
| Max. P | 0.919867 |
| Location | 9,425,738 – 9,425,831 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 75.28 |
| Mean single sequence MFE | -19.90 |
| Consensus MFE | -7.14 |
| Energy contribution | -8.14 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.36 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9425738 93 - 23771897 AACUUA-AACACGGUUAAUCGAUAUCGCUGUC------AUAUCGAUAAUUUGGACCGCCUAGUGCUGCAAAAUGCGUGUUUAAUAAAAUAAAAUAUUAGA ...(((-(((((((((.((((((((.......------))))))))......)))).......((........))))))))))................. ( -19.40) >DroSec_CAF1 4806 78 - 1 AACUUA-AACACGGUAAAUCGAUAUUGCUGUU------UUAUCGAUAAUGUGGACCGCCUAGUGCUGCAAAAUGCGUGUUUAAC---------------A ...(((-((((((....(((((((........------.)))))))..((..(..(.....)..)..)).....))))))))).---------------. ( -19.60) >DroSim_CAF1 3401 78 - 1 AACUUA-AACACGGUAAAUCGAUAUCGCUGUC------UUAUCGAUAAUUUGGACCGCCUAGUGCUGCAAAAUGCGUGUUUAAC---------------A ...(((-((((((....(((((((........------.)))))))..((((.(.(((...))).).))))...))))))))).---------------. ( -18.40) >DroEre_CAF1 4838 85 - 1 AACUUAAAACACUUUAAAUCGAUAUCGCUAAGAAAUCGAUAUCGAUAUUUUAGAACGUCUAGUGCUGCAAAGUGCUUGCGGAAC---------------A ...........((..((((((((((((.........)))))))))).))..))..(((..((..((....))..)).)))....---------------. ( -20.10) >DroYak_CAF1 5159 84 - 1 AACUUA-AACACGGUAAAUCGAUGUCGCUAACCAAUCGAUAUCGAUAAUUUAGACCGUCAAGUGUUGCAAAUUGGUUGUGGUAC---------------A ......-...(((((..((((((((((.........)))))))))).......)))))...(((..((((.....))))..)))---------------. ( -22.00) >consensus AACUUA_AACACGGUAAAUCGAUAUCGCUGUC______AUAUCGAUAAUUUGGACCGCCUAGUGCUGCAAAAUGCGUGUUUAAC_______________A ........(((((....((((((((.............))))))))..........((........))......)))))..................... ( -7.14 = -8.14 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:30 2006