Locus 3223

Sequence ID 3L_DroMel_CAF1
Location 9,415,296 – 9,415,404
Length 108
Max. P 0.729879
window5019

overview

Window 9

Location 9,415,296 – 9,415,404
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.86
Mean single sequence MFE -37.43
Consensus MFE -16.18
Energy contribution -17.10
Covariance contribution 0.92
Combinations/Pair 1.32
Mean z-score -2.11
Structure conservation index 0.43
SVM decision value 0.42
SVM RNA-class probability 0.729879
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9415296 108 - 23771897
GCCGCCUUGGAUCCGAAUGCAGCGGCCAACGCCGCAGCUGCCAUGGCAGCCCAGCCGACGCCGCACUACCUCAAUAUCAAUGGGCAGCUGGUGCAGAUCAAUCCAGCA
...((..(((((..((.(((((((((....))))).(((((....)))))(((((....(((.((...............))))).)))))))))..)).))))))). ( -40.46)
>DroPse_CAF1 10268 108 - 1
ACUACACUCGAUCCAAAUGCGGCAGCUGCGGCGGCCGCUGCUGUGGCCGCCCAACCGACUCCCCACUACCUCAACAUCAAUGGCCAAUUAGUGCAAAUUACUCAAGCG
.......(((........((((...))))(((((((((....)))))))))....))).....(((((......((....))......)))))............... ( -28.00)
>DroEre_CAF1 10765 108 - 1
GCCGCCUUGGAUCCGAAUGCAGCGGCCAACGCUGCAGCUGCUAUGGCAGCCCAGCCGGCGCCGCACUAUCUCAACAUUAACGGGCAGCUGGUGCAAAUCAAUCCAGCA
((((.((.((.......(((((((.....)))))))(((((....))))))))).))))(((....................))).(((((...........))))). ( -42.75)
>DroYak_CAF1 11009 108 - 1
GCCGCCUUGGAUCCGAAUGCAGCGGCCAACGCUGCAGCCGCCAUGGCUGCCCAGCCGACGCCCCACUACCUCAACAUUAACGGGCAGCUGGUGCAAAUCAAUCCGGCA
((((((.(((...((..(((((((.....)))))))..))))).)))((((((((....((((..................)))).))))).))).........))). ( -45.97)
>DroAna_CAF1 11956 108 - 1
GCCGCUCUGGAUCCCAAUGCGGCUGCAGCAGCGGCGGCAGGUCUCACCUCCCAGCCCUCUUCCCAUUACCUCAAUAUUAACGGACAGCUGGUGCAAAUAACUCCAGCU
(((((..(((...)))..)))))((((.(((((((((.(((.....))).)).)))............((...........))...)))).))))............. ( -36.30)
>DroPer_CAF1 16856 108 - 1
NNNNNNNNNNAUCCAAAUGCGGCAGCAGCGGCGGCCGCUGCUGUGGCCGCCCAGCCGACUCCCCACUACCUCAACAUUAAUGGCCAAUUAGUGCAAAUUACUCAAGCG
..................((((.(((.(((((((((((....)))))))))..)).).)).))...........(((((((.....)))))))............)). ( -31.10)
>consensus
GCCGCCUUGGAUCCGAAUGCAGCGGCCAACGCGGCAGCUGCUAUGGCCGCCCAGCCGACGCCCCACUACCUCAACAUUAACGGGCAGCUGGUGCAAAUCAAUCCAGCA
............(((...((.(((((....))))).)).....((((......)))).......................)))...(((((...........))))). (-16.18 = -17.10 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:27 2006