| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,399,802 – 9,399,897 |
| Length | 95 |
| Max. P | 0.697873 |
| Location | 9,399,802 – 9,399,897 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 64.06 |
| Mean single sequence MFE | -15.32 |
| Consensus MFE | -8.41 |
| Energy contribution | -7.47 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.697873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9399802 95 - 23771897 -----------------UGUGGCUUUUUUCCAAAAUCUACGUUAUUUAAUUAGCAUCCACAGUGAAACAUUUACUGGAUAAAUUACUUCUUUAAGUAAUAAAUU-GCACUUUG -----------------.((((.((((....)))).))))............(((....((((((.....)))))).....(((((((....)))))))....)-))...... ( -14.80) >DroSec_CAF1 22592 88 - 1 -----------------UGUGGCUAUUUUCCAAAAUCCACGUCAUUUAAUUGGCAUCCACAGUGGAACAUCCACUAGAGAAAA--------UAAAUAAUAAAUUUGAACUUUU -----------------......((((((((.........((((......))))......(((((.....))))).).)))))--------)).................... ( -15.20) >DroEre_CAF1 23977 87 - 1 C----------------------UUCUUUUCCAAAAACGUGUCAUUUAAUUGGCAUCCACAGUGGAACAUCUACUUGAAAAAUCGCUUCUU--UAUAA-AAAUC-ACAUAUAG .----------------------.....(((((.....((((((......))))))......)))))........................--.....-.....-........ ( -10.80) >DroYak_CAF1 20772 112 - 1 CAAAAAAUCAGUCAUGGUGUGGAUAUAUUUCAAAAAGUACGUCAUUUAAUUGGCAUCCACAGUGGAAUUUCUACUAGAGAAAUCACCUCAUCUAAUAAUAAAUU-UCAUAUCA .........((....(((((((((.(((((....))))).((((......))))))))))(((((.....))))).((....)))))....))...........-........ ( -20.50) >consensus _________________UGUGGCUAUUUUCCAAAAACCACGUCAUUUAAUUGGCAUCCACAGUGGAACAUCUACUAGAGAAAUCACUUCUUUAAAUAAUAAAUU_GCACAUUG ........................................((((......))))......(((((.....)))))...................................... ( -8.41 = -7.47 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:24 2006