Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,398,513 – 9,398,613 |
Length | 100 |
Max. P | 0.653729 |
Location | 9,398,513 – 9,398,613 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 71.27 |
Mean single sequence MFE | -24.87 |
Consensus MFE | -6.96 |
Energy contribution | -8.35 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.22 |
Mean z-score | -2.14 |
Structure conservation index | 0.28 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9398513 100 + 23771897 AAUAUGUUAAGCGCGCACUGUUAGUGAAUCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCCUUAUGCUAAUGAACAGUUCACGCUUUA-GCAUCCAACUGU--- ...((((((((((.(.((((((.....((.((((.....((((....))))(((....)))...)))).)).)))))).).))).)))-))))........--- ( -26.40) >DroSec_CAF1 21254 100 + 1 AGCAUGUUAAGCGCGCACUGUUAGUGAAUCAACAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUGAACAGUUCAAGCUUUG-GCAUCCAACUGU--- ((((((....((((((.((((........((((....)))).......)))).))))))...)))))).....((((((...((....-))....))))))--- ( -30.16) >DroSim_CAF1 20794 100 + 1 AACAUGUUAAGCGCGCACUGUUAGUGAAUCAGCCGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUAAACAGUUCAAACUUUA-GCAUCCAACUGU--- .(((.(((..((((((.((((........((((....)))).......)))).))))))....(((((((...............)))-))))..))))))--- ( -24.22) >DroEre_CAF1 22561 93 + 1 AAAAUGUAAAACGAGCAC-------GAAGCAGCACAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGUUCAUGAACAGUUCAAGCUGAA-GCAUUGAACUGU--- ............(((((.-------.(((..((((...(((((....))))).))))..)))..)))))....(((((((((((....-)).)))))))))--- ( -30.60) >DroWil_CAF1 31128 84 + 1 CGC-UGUUAAGCGUCAGCUGUU-------UAACAGCAC--GCAGAGAGAGAGAG--C--------ACUAGAGAACAGUUAAAGUGUAAAAGCUCCAACAGUUCG .((-((((..((((..((((..-------...))))))--)).(.(((.....(--(--------(((.............))))).....))))))))))... ( -22.52) >DroYak_CAF1 19348 89 + 1 CAAAUGUUAAACGCGCAC-------GAAGCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGUUAAUAAACAGUUCAAGCUUAA-GCAUUCAA------- ..((((((....((((((-------...(((((....)))))...........)))))).....((((....))))...........)-)))))...------- ( -15.34) >consensus AACAUGUUAAGCGCGCACUGUU___GAAUCAGCAGAAGUUGUAAAAAUACAGGGUGCGCCUUUAUGCUAAUGAACAGUUCAAGCUUAA_GCAUCCAACUGU___ ....((((.((((((((((..........((((....))))...........)))))))......)))....))))............................ ( -6.96 = -8.35 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:23 2006