Locus 3218

Sequence ID 3L_DroMel_CAF1
Location 9,394,385 – 9,394,476
Length 91
Max. P 0.960193
window5012

overview

Window 2

Location 9,394,385 – 9,394,476
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 93.63
Mean single sequence MFE -21.90
Consensus MFE -21.48
Energy contribution -20.84
Covariance contribution -0.64
Combinations/Pair 1.21
Mean z-score -1.37
Structure conservation index 0.98
SVM decision value 1.51
SVM RNA-class probability 0.960193
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9394385 91 + 23771897
CAUAAAAAGAAAGGACCAGAAUAACAAAGAAAACCACGCUCCGCAUUAAGGGGUGAGUGCAAGAGGGAGACUGCAGUUCUUGUGCUCCCCU
...........(((.......................(((((.......)))))(((..(((((((....)).....)))))..))).))) ( -22.80)
>DroSec_CAF1 17250 91 + 1
CAUAAAACGAAAGAACCAGAACAACAAAGAAAACCACGCUCCGCAUUAAGGGGUGAGUGCAAGAGGGAGACUGCAGUUCUUGUGCUCCCCU
.......(....)....................................((((.(((..(((((((....)).....)))))..))))))) ( -23.00)
>DroSim_CAF1 16738 91 + 1
CAUAAAACGAAAGAACCAGAACAACAAAGAAAACCACGCUCCGCAUUAAGGGGUGAGUGCAAGAGGGAGACUGCAGUUCUUGUGCUCCCCU
.......(....)....................................((((.(((..(((((((....)).....)))))..))))))) ( -23.00)
>DroEre_CAF1 18385 91 + 1
CAAAAUAAGAAAGAACCAGAACAACAAAGAAAACCACGCACCGCACUAAGGGGUGAGUGUGAGAGGAAGACUGCAGUUCUUGUGCUCCCCC
.................................................((((.(((((..((((...........))))..))))))))) ( -17.60)
>DroYak_CAF1 15150 91 + 1
CAAAAAAAGAAAGAACCAGAACAACAAAGAAAACCACGCACUGCAUUAAGGGGUGAGUGCGAGAGGGAGACUGCAGUUCUUGUGCUCCCCC
.................................................((((.(((..(((((((....)).....)))))..))))))) ( -23.10)
>consensus
CAUAAAAAGAAAGAACCAGAACAACAAAGAAAACCACGCUCCGCAUUAAGGGGUGAGUGCAAGAGGGAGACUGCAGUUCUUGUGCUCCCCU
.................................................((((.(((..(((((((....)).....)))))..))))))) (-21.48 = -20.84 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:20 2006