Locus 3213

Sequence ID 3L_DroMel_CAF1
Location 9,376,304 – 9,376,402
Length 98
Max. P 0.552427
window5003

overview

Window 3

Location 9,376,304 – 9,376,402
Length 98
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -15.18
Consensus MFE -8.92
Energy contribution -9.28
Covariance contribution 0.36
Combinations/Pair 1.17
Mean z-score -1.95
Structure conservation index 0.59
SVM decision value 0.04
SVM RNA-class probability 0.552427
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9376304 98 - 23771897
--AACUUUCCUUUAGGCAACGGCCACACU-GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCGAAUAAUAAUUAAGCCC-AGUAACCU
--...........(((..(((((((....-...)))))..............((((((((..(((((....)))))......))))))))...-.))..))) ( -16.80)
>DroSec_CAF1 2502 98 - 1
--AAGUUUCCUUUAGGCAACGGUCACACU-GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCUAAUAAUAGUUAAGCCC-AGUUACCU
--...........(((.((((((((....-...)))))..............((((((((.((((((....)))))).....))))))))...-.))).))) ( -16.40)
>DroSim_CAF1 2495 98 - 1
--AAGUUUCCUUUAGGCAACGGUCACACU-GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCUAAUAAUAGUUAAGCCC-CGUUACCU
--...........(((.((((((((....-...)))))..............((((((((.((((((....)))))).....))))))))...-.))).))) ( -16.50)
>DroEre_CAF1 2562 98 - 1
--AACUUUCCUUCAGUCAACGGUCACACU-GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCGUAUAAUAAUUAAGCCC-AGUAACCU
--.(((........((((((((.....))-)).))))...............((((((((..(((((....)))))......))))))))...-)))..... ( -12.00)
>DroYak_CAF1 2566 98 - 1
--AGCUUUCCUUCAGGAUACGGUCACACU-GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCGUUUAAUAAUUAAGCCC-AAUACCCU
--.(((((((....)))...(((((....-...)))))..................(((((((((((....))))).))))))....))))..-........ ( -14.10)
>DroAna_CAF1 2524 89 - 1
UGAAGGUACCUU-------CGGUCAGUCUGGUGUGUUCACAAAAA-CUAAAAACUAAUUAAAGAAUUAACCAAAUCUA-----AAUUAAGAGCGACUAGCUU
.((((....)))-------)((..((((((((..((((.......-................))))..))))..(((.-----.....)))..))))..)). ( -15.30)
>consensus
__AACUUUCCUUUAGGCAACGGUCACACU_GUCUGGCCACCAAAAUCCCAAACUUAAUUAAAGAAUUAAAUAAUUCGAAUAAUAAUUAAGCCC_AGUAACCU
....................(((((........)))))..............((((((((..(((((....)))))......))))))))............ ( -8.92 =  -9.28 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:12 2006