Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,370,336 – 9,370,453 |
Length | 117 |
Max. P | 0.750409 |
Location | 9,370,336 – 9,370,453 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 85.43 |
Mean single sequence MFE | -13.35 |
Consensus MFE | -11.73 |
Energy contribution | -12.06 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.88 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9370336 117 - 23771897 UUAAUCUUGGCUUUCAGUUUGAAAACAGUUCCGCUUUCAUAGUACAUACAUUCAUAUUCGACUCUCUGUUGAUAAACAAAUUUUCCCCUCUUUUAUCAGCUAAUUAUAAACAACAUU ......((((((....((.(((((.(......).)))))....))............(((((.....))))).........................)))))).............. ( -11.10) >DroSec_CAF1 17171 99 - 1 AUAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUU-----------------UGAUAAACAAAUUUC-CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU ......(((((....(((.(((((((......))))))).))).........-----------------(((((((........-......)))))))))))).............. ( -13.44) >DroSim_CAF1 5631 116 - 1 AAAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUUCAUUUUCGACUCUCUGUUGAUAAACAAAUUUU-CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU ......((((((...(((.(((((((......))))))).)))..............(((((.....)))))............-............)))))).............. ( -15.50) >consensus AUAAUCUUGGCUUUCAGUUUGAAAACAGUUUCGUUUUCAUAUUACAUACAUUCAU_UUCGACUCUCUGUUGAUAAACAAAUUUU_CCCUCCUUUAUCAGCUAAUUAUAAACAACAUU ......(((((.....((.(((((((......)))))))....))........................(((((((...............)))))))))))).............. (-11.73 = -12.06 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:11 2006