| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 938,244 – 938,350 |
| Length | 106 |
| Max. P | 0.916315 |
| Location | 938,244 – 938,350 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 72.91 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -13.86 |
| Energy contribution | -13.26 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.69 |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.916315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 938244 106 + 23771897 CUAAGGAUCGGUCAAAACGAAG-CAAAACUACAUUGUACAAUUAAUAUUGAUUAAUUUUCCGAAAACUGCCUUCAAAGAUAGCUGGAAAAUCGAUCCGUCUCGCAGU ....((((((((.........(-(((.......)))).((((....))))......((((((....(((.((....)).))).)))))))))))))).......... ( -16.80) >DroSec_CAF1 72110 81 + 1 CUAAGGAUCGGUCGAAU--------------CAUUGUACAAUUAAUAUUGAUUAAUUUUCCGAA------------AGAUAGCUGGAAAAUCGAUCCGUUCAGCAGU ....((((((((..(((--------------((.(((.......))).)))))...((((((..------------.......)))))))))))))).......... ( -18.10) >DroSim_CAF1 65308 95 + 1 CUAAGGAUCGAUCAAAGCGAAGUCUAAACUACAUUGUACAAUUAAUAUUGAUUAAUUUUCCGAU------------AGAUAGCUGGAAAAUCGAUCCGUUCAGCAGU ....((((((((...(((...(((((.((......))..(((((((....)))))))......)------------)))).))).....)))))))).......... ( -20.20) >DroEre_CAF1 75323 106 + 1 CAAAGGAUCGAUCAAAACGCUG-UGAAACUACAUUAUAUAAUUGAUAUUGAUUAAUUUUCCACAAACUGGCAGCAAAGGUAGCAGGAAAAUCGAUCCAUCCAGCAAU ....(((((((((((......(-((......))).......)))))........(((((((.(.....)((.((....)).)).))))))))))))).......... ( -19.42) >DroYak_CAF1 75879 100 + 1 CUAGGCAUCAAUCAAAGCGAUG-UGAAACCACAUUAUAUAAUUAGUAUUGAUUAAUUUUCCAAAAACUGUCAGCAAACGUAGCUGGAAAAUCGAUGC------CCGU ...((((((((((((.((((((-((....)))))).((....)))).)))))).((((((((...((.((......))))...)))))))).)))))------)... ( -25.20) >consensus CUAAGGAUCGAUCAAAACGAAG_CGAAACUACAUUGUACAAUUAAUAUUGAUUAAUUUUCCGAAAACUG_C__CAAAGAUAGCUGGAAAAUCGAUCCGUCCAGCAGU ....((((((((............................((((((....))))))((((((.....................)))))))))))))).......... (-13.86 = -13.26 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:10 2006