Locus 3209

Sequence ID 3L_DroMel_CAF1
Location 9,360,095 – 9,360,186
Length 91
Max. P 0.639382
window4997

overview

Window 7

Location 9,360,095 – 9,360,186
Length 91
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 79.33
Mean single sequence MFE -28.00
Consensus MFE -20.00
Energy contribution -20.67
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.71
SVM decision value 0.22
SVM RNA-class probability 0.639382
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9360095 91 - 23771897
AUGAUGUGAUGUGUGUGAAU--------------GUAAUACAUUGGGUGUGU-UGUGGUGUGUCCUU---UUUAGUCUUGCUCUCUCCGAGCAGCGCGGCAACACUCCC
..((((((.((..(....).--------------.)).))))))(((.((((-(((.((((...((.---...))...(((((.....))))))))).))))))).))) ( -32.00)
>DroSim_CAF1 8740 82 - 1
---------UGUGUGUGAAU--------------GUAAUACAUUGGGUGUGU-UGUGAUGUGUCCUU---UUUAGUCUUGCUCUCUCCGAGCAGCGCGGCAACACUCCC
---------.((((((....--------------...)))))).(((.((((-(((..(((((.((.---...))...(((((.....))))))))))))))))).))) ( -26.10)
>DroEre_CAF1 8113 100 - 1
---------UGUGUGUGAAUGUGUUCGUGAGCGGGUAAUACAUUGGGUGUGUUUGUGGUGUAUCCUUUUUUUUAGUCUUGCACUCUCCGAGCAGCGCUGCAACACUCCC
---------.((((((..((.((((....)))).)).)))))).(((.(((((.(..((((...((.......))...(((.(.....).)))))))..)))))).))) ( -25.90)
>consensus
_________UGUGUGUGAAU______________GUAAUACAUUGGGUGUGU_UGUGGUGUGUCCUU___UUUAGUCUUGCUCUCUCCGAGCAGCGCGGCAACACUCCC
..........((((((.....................)))))).(((.((((.(((.((((...((.......))...(((((.....))))))))).))))))).))) (-20.00 = -20.67 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:06 2006