| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,351,613 – 9,351,748 |
| Length | 135 |
| Max. P | 0.905627 |
| Location | 9,351,613 – 9,351,730 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 86.89 |
| Mean single sequence MFE | -36.97 |
| Consensus MFE | -28.63 |
| Energy contribution | -28.63 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905627 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9351613 117 + 23771897 ACGCGCAAAAGCAGAGCUAGUGCGCCUGUAUGAGUGAGAGAGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAAC ..((((....((((.((....))..))))...................((((((((((((((...))))))))))))))..))))..........((((.....))))......... ( -36.50) >DroSim_CAF1 1561 117 + 1 ACGCGCAAAAAUAGAGGCAGUGCGCCUGUAUGCGUGAGAGAGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAAC ..((((.........(((..(((((......))))).....)))....((((((((((((((...))))))))))))))..))))..........((((.....))))......... ( -38.80) >DroEre_CAF1 1069 115 + 1 GAGCGAAAAUUUUGCAG-UGUGCGCCCGUGUGCGUGAGCGAGCCGAAGUUUCUAGAGAGUUGUUGCA-UUUUCUAGAAAGAGCACAAGAGAAACAGCCGGCUAACGGCAAAUGAGAC ..((((.....))))..-(((((....((.(((....))).)).....((((((((((((......)-)))))))))))..))))).........((((.....))))......... ( -35.60) >consensus ACGCGCAAAAAUAGAGG_AGUGCGCCUGUAUGCGUGAGAGAGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAAC ..(((((...((...))...))))).(((.(((((.....(((((...((((((((((((((...))))))))))))))..((............))))))).)).))).))).... (-28.63 = -28.63 + 0.01)
| Location | 9,351,653 – 9,351,748 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 91.70 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.73 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.97 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867497 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9351653 95 + 23771897 AGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAACAAAACGUCAGUUU--UUUUU .((.(...((((((((((((((...))))))))))))))...)))(((((((((.((((.....)))).......((.....))..))))--))))) ( -27.10) >DroSim_CAF1 1601 97 + 1 AGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAACAAAACGUCAUUUUUUUUUUU .((((...((((((((((((((...)))))))))))))).(((((..........))..)))..))))............................. ( -23.50) >DroEre_CAF1 1108 93 + 1 AGCCGAAGUUUCUAGAGAGUUGUUGCA-UUUUCUAGAAAGAGCACAAGAGAAACAGCCGGCUAACGGCAAAUGAGACAACACGUCAGUUU---CUUU .((.....((((((((((((......)-)))))))))))..))...((((((((.((((.....))))......(((.....))).))))---)))) ( -29.30) >consensus AGCCGAAGUUUCUAGAGAGUUGUUGCAAUUUUCUAGAAAGAGCGCAAAAGAAACAGCCGGCUAACGGCAAACAAAACAAAACGUCAGUUU__UUUUU .(.((...((((((((((((((...))))))))))))))................((((.....)))).............)).)............ (-21.40 = -21.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:00 2006