| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,351,191 – 9,351,293 |
| Length | 102 |
| Max. P | 0.939043 |
| Location | 9,351,191 – 9,351,293 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 79.22 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -9.27 |
| Energy contribution | -9.93 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.939043 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9351191 102 - 23771897 UGAACAACUCAAAGCAACUUUGCGCAAAAGCAAAACUUCAAACGAGAAAA-AAAAGGAUUAAAAACCUUUGCUUACAAGUCAAACAAGUUCAUUCAACUUAAC (((((..(((...(((....)))((....))............)))....-.(((((........))))).................)))))........... ( -15.10) >DroSim_CAF1 1141 103 - 1 UGAACAAGUCGGAGCAACUUUGCGCUAAAGCAAAAUUUCAAAAGAGAAAAAAAAAGGAUUAAAAACCUUUGCUUACAAGUCAAACAAGUUCAUUCAACUUAAC (((((..((..(((((....)))....((((....((((......))))...(((((........))))))))).....))..))..)))))........... ( -16.50) >DroEre_CAF1 681 84 - 1 UAAACAAGUCGGAGC--------CCAAAAGCAAAACUUCAAAAAAGAAA--AAAAGGAUAAAAUACCUUUGCUUGCA---------AGUUCAUUCAACCUAAC ...........((((--------....((((.....(((......))).--.(((((........)))))))))...---------.))))............ ( -11.80) >consensus UGAACAAGUCGGAGCAACUUUGCGCAAAAGCAAAACUUCAAAAGAGAAAA_AAAAGGAUUAAAAACCUUUGCUUACAAGUCAAACAAGUUCAUUCAACUUAAC (((((........((........))..((((.....(((......)))....(((((........))))))))).............)))))........... ( -9.27 = -9.93 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:58 2006