| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,343,196 – 9,343,286 |
| Length | 90 |
| Max. P | 0.787793 |
| Location | 9,343,196 – 9,343,286 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 72.14 |
| Mean single sequence MFE | -19.83 |
| Consensus MFE | -13.04 |
| Energy contribution | -12.57 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.787793 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9343196 90 - 23771897 UUUUUGCCAACUUGAUAA-------------AACCCACCUGCUUGUCUUUUUCGAGCAGCUCUUUGUCUUUUUGAUUCAGGCGCUUCUCCAGACUGGCGAUGC ...((((((..(((....-------------........((((((.......))))))((.((..(((.....)))..)))).......)))..))))))... ( -20.30) >DroVir_CAF1 8809 83 - 1 UUUUUGCG--------------------UGUCACCCACUUGCUUAUCCUUCUCCAGGAGCUCUUUGUCUUUUUGAUUCAAGCGCUUCUCAAGACUGGCAAUGC .....(((--------------------((.....)))(((((......(((..((((((.(((.(((.....)))..))).))))))..)))..))))).)) ( -18.00) >DroSec_CAF1 8539 102 - 1 UUUUUGCGAACUUGAUAAAAA-UCCCUUUCAAACCCACCUGUUUGUCUUUUUCGAGCAGCUCUUUGUCUUUUUGAUUCAGGCGCUUCUCCAGGCUGGCGAUGC ...((((.(.((((.......-.......(((((......)))))........(((.((((((..(((.....)))..))).))).))))))).).))))... ( -20.30) >DroSim_CAF1 7695 102 - 1 UUUUUGCGAACCUGAUAAAAA-UCCCUUUCAAACCCACCUGUUUGUCUUUUUCGAGCAGCUCUUUGUCUUUUUGAUUCAGGCGCUUCUCCAGGCUGGCGAUGC ...((((.(.((((.......-.......(((((......)))))........(((.((((((..(((.....)))..))).))).))))))).).))))... ( -23.00) >DroMoj_CAF1 9087 79 - 1 ----UGAU--------------------CGCCACUCACCUGCUUGUCCUUCUCGAGCAGUUCUUUGUCCUUUUGAUUCAAGCGCUUCUCCAGACUGGCGAUGC ----..((--------------------(((((.((..(((((((.......)))))))......((.(((.......))).)).......)).))))))).. ( -22.00) >DroPer_CAF1 12043 85 - 1 -------------GAAAGACAUG-CGU----UACUAACUUGCUUAUCCUUCUCCAGCAGUUCUUUGUCUUUUUGAUUGAGACGCUUCUCCAGGCUGGCGAUGC -------------(((.((...(-((.----........)))...)).))).(((((.......((((((.......)))))).........)))))...... ( -15.39) >consensus UUUUUGCG_____GAUAA__________U__AACCCACCUGCUUGUCCUUCUCGAGCAGCUCUUUGUCUUUUUGAUUCAGGCGCUUCUCCAGACUGGCGAUGC ........................................(((((((..(((.(((.(((.(((.(((.....)))..))).))).))).)))..))))).)) (-13.04 = -12.57 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:57 2006