Locus 3202

Sequence ID 3L_DroMel_CAF1
Location 9,342,488 – 9,342,595
Length 107
Max. P 0.542880
window4986

overview

Window 6

Location 9,342,488 – 9,342,595
Length 107
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.80
Mean single sequence MFE -34.53
Consensus MFE -25.48
Energy contribution -25.57
Covariance contribution 0.08
Combinations/Pair 1.05
Mean z-score -0.85
Structure conservation index 0.74
SVM decision value 0.02
SVM RNA-class probability 0.542880
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9342488 107 - 23771897
UCGCGCCUGUCAAAGGCUGAUCGCAGCUUGCAUUCAUCGCACUGCACCGGCGGUCCGUACUUUGCCUCGUAGCUGGCGCAUCUGUAU-ACGAAG---------GCGAUAG--GGU-AUAU
..((.((((((((((((.((((((.((.(((.......)))..))....)))))).)).))))((((((((....(((....))).)-))).))---------)))))))--)))-.... ( -36.60)
>DroVir_CAF1 8031 103 - 1
UCGCGCCUGUCAAAGGCCGAUCGCAGCUUGCACUCGUCGCAUUGUGUGGGCGGUCCGUACUUAGCCUCAUAGCUGGCGCAUCUAUUU-GC--------------AGUUAG--UGUGAUAU
(((.((((.....)))))))((((.(((..(((..........)))..)))(((.........))).....(((((((((......)-))--------------.)))))--)))))... ( -33.50)
>DroGri_CAF1 8445 110 - 1
UCGCGCCUGUCAAAGGCCGAUCGCAGCUUGCACUCGUCGCAUUGUGUGGGCGGUCCGUAUUUGGCCUCGUAGCUGGCGCAUCUAUUU-GCAGUU---------CAGUUAGUGUGUGAUAU
(((.((((.....)))))))((((((((..(((..........)))..)))((.(((....)))))...(((((((((((......)-)).).)---------))))))...)))))... ( -38.10)
>DroWil_CAF1 8604 96 - 1
UCGCGCCUGUCAAAGGCUGAUCGCAGCUUGCACUCAUCACAUUGCACGGGCGGUCCAUAUUUUGCCUCAUAGCUGGCGCAUCUAUUUUACCAAA------------------------AU
..(((((.((...((((.((((((..(.((((..........)))).).))))))........))))....)).)))))...............------------------------.. ( -27.10)
>DroMoj_CAF1 8305 117 - 1
UCGCGCCUGUCAAAGGCUGAUCGCAGCUUGCACUCGUCGCACUGUGUCGGGGGUCCGUACUUUGCCUCGUAGCUGGCGCAUCUAUUU-GCAGUUUGCAGUUUGCAGUUAG--UUUGAUAU
..(((((......((((((....))))))((...((..(((..(((.(((....))))))..)))..))..)).)))))..(((.((-((((........)))))).)))--........ ( -37.60)
>DroAna_CAF1 7612 98 - 1
UCGCGCCUGUCAAAGGCUGAUCGCAGCUUGCAUUCAUCGCACUGCACUGGCGGUCCAUACUUCGCCUCGUAGCUGGCGCAUCUAUGG-CGCAGA---------GCGG------------U
..((((((.....))))(((..((.....))..)))..))(((((.(((.((..(((((..(((((........)))).)..)))))-))))).---------))))------------) ( -34.30)
>consensus
UCGCGCCUGUCAAAGGCUGAUCGCAGCUUGCACUCAUCGCACUGCACGGGCGGUCCGUACUUUGCCUCGUAGCUGGCGCAUCUAUUU_GCAAAA__________AGUUAG__UGU_AUAU
..(((((.((...((((.((((((.((.(((.......)))..))....))))))........))))....)).)))))......................................... (-25.48 = -25.57 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:56 2006