| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,339,269 – 9,339,359 |
| Length | 90 |
| Max. P | 0.649205 |
| Location | 9,339,269 – 9,339,359 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.96 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -13.46 |
| Energy contribution | -13.77 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.649205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9339269 90 + 23771897 -----------AAAAUCGAACUCACCUCCUGGCACACUCGCUGGUCGACACACAUCAGCUUCCUGAACUCCUCCAGUUCUUUUUUCAGUGUCUGCCGGUAG -----------..............((.((((((((((.((((((........)))))).....(((((.....))))).......)))))..))))).)) ( -21.90) >DroPse_CAF1 4552 85 + 1 ----------------UGCACUUACCUCUUGGCACAUCCGUUGGUCCUGGGACAACAUCUUUCUGAACUCCUCAAAGUCCUUUUUCAGCGUCUGACGAUAA ----------------........((....))..((..((((((....(((((.......................)))))...))))))..))....... ( -14.20) >DroSec_CAF1 4629 89 + 1 ------------AAAUCCAACUCACCUCCUGGCACACUCGCUGGUCGACACACAUCAGCUUCCUGAACUCCUCCAGUUCUUUUUUCAGUGUCUGCCUGUAG ------------..................((((((((.((((((........)))))).....(((((.....))))).......)))))..)))..... ( -18.30) >DroSim_CAF1 3779 89 + 1 ------------AAAUCCAACUCACCUCCUGGCACACUCGCUGGUCGACACACAUCAGCUUCCUGAACUCCUCCAGUUCCUUUUUCAGUGUCUGCCGGUAG ------------.............((.((((((((((.((((((........)))))).....(((((.....))))).......)))))..))))).)) ( -21.50) >DroYak_CAF1 4647 101 + 1 AAAAGGGAAACAAAAUCAAGCUUACCUCCUGGCACACUCGCUGGUCGACACACAUCAGCUUCCUGAACUCCUCCAGUUCUUUUUUCAGGGUCUGCCGGUAG .....(....)..............((.((((((.((((((((((........)))))).....(((((.....)))))........)))).)))))).)) ( -26.30) >DroAna_CAF1 4501 90 + 1 -----------GAAUUUCCACUCACCUCUUGGCAAACGCGCUGAUCUAUGGACAUCAGUUUCCGGAACUCUUCCAGCUCCUUUUUGACGGUCUGUCGGUAG -----------.................(..((......))..).((((.((((...(((...(((.((.....)).))).....)))....)))).)))) ( -14.90) >consensus ____________AAAUCCAACUCACCUCCUGGCACACUCGCUGGUCGACACACAUCAGCUUCCUGAACUCCUCCAGUUCCUUUUUCAGUGUCUGCCGGUAG ............................((((((.((..((((((........)))))).....(((((.....)))))..........)).))))))... (-13.46 = -13.77 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:55 2006