Locus 3200

Sequence ID 3L_DroMel_CAF1
Location 9,334,419 – 9,334,536
Length 117
Max. P 0.511589
window4984

overview

Window 4

Location 9,334,419 – 9,334,536
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 84.72
Mean single sequence MFE -32.21
Consensus MFE -22.36
Energy contribution -22.96
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.69
SVM decision value -0.04
SVM RNA-class probability 0.511589
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9334419 117 - 23771897
UCACACACACACACACAGAGGAGAUAGCUUAUAACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAGCUAGCUUCUCUGGCUGAUAACUGCUAGCUGAUAACCGAUGAGUGGAACCC
...........(((.((..((...(((((.........(((((((((.(((((((.((.........)).))))).)).)))))))))....)))))....))..)).)))...... ( -34.22)
>DroSec_CAF1 31887 115 - 1
UCACACAC--GCACACAGAGGAGAUAGCUUAUUACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAGCUAGCUUCUCUGGCUGAUAACUGAUAGCUGAUAACCGAUGAGUGGAACCC
........--.(((.((..((...(((((.((((....(((((((((.(((((((.((.........)).))))).)).))))))))))))))))))....))..)).)))...... ( -35.30)
>DroSim_CAF1 32172 90 - 1
---------------------------CUUAUAACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAGCUAGCUUCUCUGGCUGAUAACUGAUAGCUGAUAACCGAUGAGUGGAACCC
---------------------------.......((..(((((((((.(((((((.((.........)).))))).)).))))))))).....(((.((.....)).)))))..... ( -27.10)
>DroEre_CAF1 26501 108 - 1
UCACACAC--GCACACA---GAGAUAGCUUAUAACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAG----CUUCUCCAGCUGAUAACUGAUAGCUGAUAACUGAUGAGUGGAACCC
.......(--((.((((---(...(((((.........((((((((((..(((((..(....)...)----))))..).)))))))))....)))))....))).)).)))...... ( -31.02)
>DroYak_CAF1 38117 108 - 1
UCACACAC--GCACACA---GAGAUAGCUUAUAACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAG----CUUCUCUAGCUGAUAACUUAUAGCUGAUAAGCGAUGAGUGGAAUCC
((((.(((--((.(...---..).(((((.((((....(((((((((.(((((((..(....)...)----)))).)).))))))))))))))))))....))).)).))))..... ( -33.40)
>consensus
UCACACAC__GCACACA___GAGAUAGCUUAUAACCGUGUUAUCAGCGAGGGAGCGGGAAUUCAUAGCUAGCUUCUCUGGCUGAUAACUGAUAGCUGAUAACCGAUGAGUGGAACCC
..................................((..(((((((((.(((((((...............))))).)).))))))))).....(((.((.....)).)))))..... (-22.36 = -22.96 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:54 2006