| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 935,755 – 935,846 |
| Length | 91 |
| Max. P | 0.819697 |
| Location | 935,755 – 935,846 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 74.68 |
| Mean single sequence MFE | -21.81 |
| Consensus MFE | -16.54 |
| Energy contribution | -16.46 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.819697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 935755 91 + 23771897 UUGUU---GUUGUACUUGCCAGCUUAUUGCCACUGCUGUUUUGUGCUGUGUGCGAAUGCACUGAGAGAAAUCUAUAUCCUUUUGC--UUA----CUUUA-U--- .....---...((((..(.((((...........)))).)..)))).(((.(((((.......(((....))).......)))))--.))----)....-.--- ( -18.34) >DroSec_CAF1 69683 77 + 1 UUGUU---GUUGUACUUGCCAGCUUAUUGCCACUGCUGC----UGCUGUGUGCGAGUGCACUGAGAGAAAUCUAUAUCCAUU----------------C-U--- .....---..(((((((((..((.....))(((.((...----.)).))).)))))))))...(((....))).........----------------.-.--- ( -20.40) >DroSim_CAF1 62449 77 + 1 UUGUU---GUUGUACUUGCCAGCUUAUUGCCACUGCUGC----UGCUGUGUGCGAGUGCACUGAGAGAAAUCUAUAUCGUUU----------------C-U--- .....---..(((((((((..((.....))(((.((...----.)).))).)))))))))...(((....))).........----------------.-.--- ( -20.40) >DroEre_CAF1 72844 96 + 1 UUGUUGCUGUUGUAUUUGCAAGCUUAUUGCCACUGCUGC----UGCUGUGUGCGAGUGCACUGCGAGAAAUGUGCUUUUCC--CAACUUUUGGCAUUUUUUA-- ...((((.((.(((((((((.((.....))(((.((...----.)).)))))))))))))).))))((((.(((((.....--........))))).)))).-- ( -26.62) >DroYak_CAF1 73392 93 + 1 UUGUU---GUUGUGCUUGCCAGCUUAUUGCCACUGCUGC----UGCUGUGUGCGAGUGCACUGCGAGAAAUGUACUUUUCU--GA--UUAAGAGAUUUAUUUGG ((((.---((.(..(((((..((.....))(((.((...----.)).))).)))))..))).)))).(((((....(((((--..--...)))))..))))).. ( -23.30) >consensus UUGUU___GUUGUACUUGCCAGCUUAUUGCCACUGCUGC____UGCUGUGUGCGAGUGCACUGAGAGAAAUCUAUAUCCCUU_____UU______UUUA_U___ ..........(((((((((..((.....))(((.((........)).))).)))))))))............................................ (-16.54 = -16.46 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:09 2006