| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,320,542 – 9,320,650 |
| Length | 108 |
| Max. P | 0.783239 |
| Location | 9,320,542 – 9,320,650 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.77 |
| Mean single sequence MFE | -32.34 |
| Consensus MFE | -23.51 |
| Energy contribution | -22.60 |
| Covariance contribution | -0.91 |
| Combinations/Pair | 1.47 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.783239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9320542 108 - 23771897 CUUGGAGACCGGAAGUUUAAAUGGCUUUAGGUUUCCUCUAGUAGGCAUACCACCCCAGCCUUUUAUACUGACCACAACUAGUUUUCCAUCCACAUGGAUUUCAGGAUC ...(((((((.((((((.....)))))).))))))).(((((((((...........)))).......((....)))))))...(((((((....))))....))).. ( -26.40) >DroSec_CAF1 18517 108 - 1 CUUGGAGACCGGAAGAUUAAGGGGCUCUAGCUUUCCUCUAGUAGGCAUACCAGCCCAGCCCCUUAUACUGAUCACUACAAGUUUUCCAUCCACAUGGACUUCAGGAUC (((((((...((((((((((((((((((((.......))))..(((......))).)))))))))...............))))))).(((....))))))))))... ( -35.16) >DroSim_CAF1 18684 108 - 1 CUUGGAGACCGGAAGAUUAAGGGGCUCUAGCUUUCCUCUAGUAGGCAUACCACCCCAGCCCCUUAUACUGAUCACUACAAGCUUUCCAUCCACAUGGACUUCAGGAUC (((((((...(((((..(((((((((((((.......))))..((....)).....)))))))))..((..........)).))))).(((....))))))))))... ( -29.70) >DroEre_CAF1 12989 108 - 1 UCUGGGCACCGGAAGAUUAAGGGGCUCUAGCUUUCCUCUAGUAGGCAAGCCACCCCAGCCCUUUAUACUGAUCACUACUAGUUUUCCAUCCACAUGGACCUCAGGAUC ((((((....((((((.(((((((((...((((.(((.....))).))))......)))))))))..(((........))))))))).(((....))).))))))... ( -31.00) >DroYak_CAF1 20526 108 - 1 CCUGGAAACCGGAAGAUCAAGGGGCUCUAGCUUUCCUCUAGUAGGCAUUCCACCCCAGCCCUUUAUACUGAUCACUUCUAGUUUUCCAUCCACAUGGACUUCAGGAUU (((((((((..(((((((((((((((((((.......))))..((....)).....))))))).....)))))..)))..))).(((((....))))).))))))... ( -29.30) >DroAna_CAF1 11892 108 - 1 UCUGGAGACUGGAAGAUCUAAGAGUGGGAGUGUGCCUCUAGUUGGCAUACCUCCCCAGCUCUUUCUUCCAAUUACCACUAGUUUUCCAUCGAUGUGGACGUCGGAAUC ..(((.((.(((((((...(((((((((((((((((.......)))))).)))))..))))))))))))).)).)))...........((((((....)))))).... ( -42.50) >consensus CCUGGAGACCGGAAGAUUAAGGGGCUCUAGCUUUCCUCUAGUAGGCAUACCACCCCAGCCCUUUAUACUGAUCACUACUAGUUUUCCAUCCACAUGGACUUCAGGAUC (((((((..(((.....(((((((((((((.......))))..((....)).....)))))))))..)))..............(((((....))))))))))))... (-23.51 = -22.60 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:51 2006