Locus 3197

Sequence ID 3L_DroMel_CAF1
Location 9,311,465 – 9,311,583
Length 118
Max. P 0.769139
window4979

overview

Window 9

Location 9,311,465 – 9,311,583
Length 118
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.28
Mean single sequence MFE -45.33
Consensus MFE -28.00
Energy contribution -27.20
Covariance contribution -0.80
Combinations/Pair 1.32
Mean z-score -1.94
Structure conservation index 0.62
SVM decision value 0.52
SVM RNA-class probability 0.769139
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9311465 118 + 23771897
GACAUUGGCCAUUACCUUUAUGGGCGACUAUGGCCGGUUUAAGCCCGGUCCCAAACAGCUGGAAGGUGUCCAAUUUCUGCUGGCCCAUGCAGUGGCCAAUCGAAAUAUUGAUGUGGAC
..(((((((((((.....(((((((......((((((.......)))))).....((((.(((((........)))))))))))))))).))))))))(((((....))))))))... ( -41.70)
>DroVir_CAF1 24488 118 + 1
CACACUGGCCAUCACCUUUAUGGGCGACUAUGGCCGCUAUCAGCCCACCGCCAAGCAGCUGGAGGGCGUGCAAUUCCUUUUGGCCCAUGCCGUGGCCAAUCACAAAUUGGAUUUGGAC
..(((.(((((((.(((....))).))...))))).......((((.((((......)).)).)))))))(((.(((..(((((((.....).)))))).........))).)))... ( -40.00)
>DroGri_CAF1 25625 118 + 1
CACACUGGCUAUUACCUUUAUGGGUGACUAUGCCCGCUACACGCCCACCCCCAAGCAGCUGGAGGGAGUUCAGUUCCUCCUGGCCCAUGGGGUGGCCAAUCGCAAGCUGCAUGUGGAC
......(((..((((((....))))))....)))..(((((.(((((((((......((((((((((......))))))).)))....))))))).....(....)..)).))))).. ( -43.40)
>DroYak_CAF1 10735 118 + 1
GACAUUGGCCAUUACCUUCAUGGGCGACUACGGUCGCUACAAGCCCAGUGCCAAGCAGCUGGAAGGUGUCCAAUUCCUGUUGGCCCAUGCCGUGGCCAACAGGAAUCUUGAGGUGGAC
....((.(((..(((((((...((((((....)))))).......((((((...))).))))))))))....((((((((((((((.....).))))))))))))).....))).)). ( -52.60)
>DroMoj_CAF1 19464 118 + 1
CACACUCGCCAUCACAUUUAUGGGCGACUAUGGCCGCUAUGUGCCCACACCCAAGCAGCUGGAGGGCGUGCAGUUCCUGCUGGCCCAUGCCGUGGCCAAUCGCAAAGUGGAUUUAGAC
..((((..((((.......))))((((...(((((((.....((((....(((......))).))))..((((...)))).(((....)))))))))).))))..))))......... ( -39.50)
>DroAna_CAF1 2574 118 + 1
GACACUGGCCGUUACAUUUAUGGGCGACUACGGUCGCUUCCAGCCCUCCGCCAAACAGCUGGAGGGCGUCCAAUUUCUGUUGGCCCAUGCCGUGGCCAAUGGAGCCUUGGAGGUGGAU
..((((((((((.......))))(((((....)))))..)).(((((((((......)).))))))).(((((.((((((((((((.....).)))))))))))..)))))))))... ( -54.80)
>consensus
CACACUGGCCAUUACCUUUAUGGGCGACUAUGGCCGCUACAAGCCCACCCCCAAGCAGCUGGAGGGCGUCCAAUUCCUGCUGGCCCAUGCCGUGGCCAAUCGCAAACUGGAUGUGGAC
.....(((((((......(((((((......(((........)))..........((((.((((.........)))).)))))))))))..))))))).................... (-28.00 = -27.20 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:50 2006