Locus 3195

Sequence ID 3L_DroMel_CAF1
Location 9,307,510 – 9,307,604
Length 94
Max. P 0.776659
window4976

overview

Window 6

Location 9,307,510 – 9,307,604
Length 94
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 72.14
Mean single sequence MFE -43.17
Consensus MFE -25.11
Energy contribution -29.67
Covariance contribution 4.56
Combinations/Pair 1.06
Mean z-score -1.65
Structure conservation index 0.58
SVM decision value 0.55
SVM RNA-class probability 0.776659
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9307510 94 + 23771897
-GUUGCCGUCGU-------GUGGCGAAAGUGAAGCUU------GCACAGCGUGCAGCGAGUGGCUGACAUCUCGUGUGGC------------UGUUGGUUGAGCGUUGAGCACAUUAAAU
-.((((((....-------.))))))..........(------((.((((((.((((.((..(((.((((...)))))))------------..)).)))).)))))).)))........ ( -32.50)
>DroPse_CAF1 173631 119 + 1
UGUUGCCGUCGUCUGGCCUGUGGCGAAAGAGAAGCCUCCUGCCGCACAGCAGGCGGCAUCUGGCUGGCAUGUUGUGGGUGCGACAUCCAUGGCGAAGAGUGAGUGUUGA-UACACUUAAU
..(((((((((((((...(((((((...(((....))).)))))))...)))))))).......(((.(((((((....)))))))))).)))))....(((((((...-.))))))).. ( -48.50)
>DroPer_CAF1 174850 119 + 1
UGUUGCCGUCGUCUGGCCUGUGGCGAAAGAGAAGCCUCCUGCCGCACAGCAGGCGGCAACUGGCUGGCAUGUUGUGGGUGCGACAUCCAUGGCGAAGAGUGAGUGUUGA-UACACUUAAU
..(((((((((((((...(((((((...(((....))).)))))))...)))))))).......(((.(((((((....)))))))))).)))))....(((((((...-.))))))).. ( -48.50)
>consensus
UGUUGCCGUCGUCUGGCCUGUGGCGAAAGAGAAGCCUCCUGCCGCACAGCAGGCGGCAACUGGCUGGCAUGUUGUGGGUGCGACAUCCAUGGCGAAGAGUGAGUGUUGA_UACACUUAAU
...((((.(((((........)))))......((((...((((((.......))))))...))))))))(((..(((((.....)))))..))).....(((((((.....))))))).. (-25.11 = -29.67 +   4.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:47 2006