Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 9,303,354 – 9,303,468 |
Length | 114 |
Max. P | 0.918821 |
Location | 9,303,354 – 9,303,468 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.45 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -17.71 |
Energy contribution | -18.40 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.08 |
Mean z-score | -2.38 |
Structure conservation index | 0.58 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9303354 114 - 23771897 GUGUGAGUGUGGCUGGAAUUAUGCAAAUUGAACCGCAGAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUCGGCGGUGCGCAC-ACACUCGCACACACAUACAAA--- ((((((((((((((((((((((((((((((.....)))....((.((((((....)))))).)).)))))))))...))))))).(....).)-))))))))))...........--- ( -37.80) >DroGri_CAF1 155687 102 - 1 GUGUG-------CUGGAAUUAUGCAAAUUGAACCGCAAAAGCGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUUGUGGAGAGCAGGGUACACACACAUCGA--------- (((((-------((....((((((((((((.....)))..((((((..((....))..)))))).)))))))))......((((.....))))))))))).........--------- ( -25.90) >DroMoj_CAF1 181104 109 - 1 GUGUG-------CUGGAAUUAUGCAAAUUGAACCGCAAAAGCGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUUGGGGUAA--AAGGCACGCACACAUCGCUAUACAUAC (((((-------(........(((...(((..(((((((.((((((..((....))..)))))).)))))..(((....)))))..)))--...))).)))))).............. ( -26.00) >DroAna_CAF1 151163 114 - 1 GUGUGAGUGUGGCUGGAAUUAUGCAAAUUGAACCGCAGAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUGGCGGCAAACAC-ACACACACACACAGUUACAUU--- (((((.(((((..((......(((..........))).....(((.(((((((((((...((((....))))))))))))))).)))...)).-.))))).))))).........--- ( -32.70) >consensus GUGUG_______CUGGAAUUAUGCAAAUUGAACCGCAAAAACGCUUUUAAAAUGUUUUAAGUGCAUUUGCAUGAAUAUUUUGGCGGUAAGCAC_ACACACACACACAGAUACA_A___ (((((................(((..........))).....((..(((((((((((...((((....)))))))))))))))..))............))))).............. (-17.71 = -18.40 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006