Locus 3192

Sequence ID	3L_DroMel_CAF1
Location	9,301,290 – 9,301,381
Length	91
Max. P	0.885475

overview

Window 2

Location	9,301,290 – 9,301,381
Length	91
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	79.26
Mean single sequence MFE	-23.33
Consensus MFE	-13.63
Energy contribution	-16.07
Covariance contribution	2.44
Combinations/Pair	1.07
Mean z-score	-2.25
Structure conservation index	0.58
SVM decision value	0.94
SVM RNA-class probability	0.885475
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9301290 91 + 23771897
UUUUAAGAGUAU---UAUGCUCUUGAACCAGUAU--------------------UAAAUUGAAAGCCAUGACUUUAAAACUUGGCCAUUUUGAUCUGCUUUAUUUAAACUGACA
.(((((((((..---...))))))))).((((.(--------------------(((((..(((((...((..((((((........)))))))).)))))))))))))))... ( -17.90)
>DroSec_CAF1 149171 111 + 1
UUUUAAGAGUAU---UAUGCUCUUGAACCAGAAUAAAACACUUGGUCUGAGCUUUAAAAUGAAAGCCAUGACUUUAAAACAUGGCCAUUUUGAUCUGCUUUAUUUAAAUUGACA
.(((((((((..---...))))))))).((((.(((.....))).))))(((.((((((((...((((((.........))))))))))))))...)))............... ( -26.60)
>DroSim_CAF1 152356 111 + 1
UUUUAAGAGUAU---UAUGCUCUUGAACCAGAAUUAAACACUUGGUCUGGGCUUUAAAAUGAAAGCCAUGACUUUAAAACUUGGCCAUUUUGAUCUGCUUUAUUUAAAUUGACA
.(((((((((..---...)))))))))(((((.((((....)))))))))((.((((((((...((((.............))))))))))))...))................ ( -25.62)
>DroYak_CAF1 168215 114 + 1
UUUCAAGAGUAUUAUUAUGCUCUUCAAUCAGCAUUAAACACUUGGUCAGAGCUUCGAAAGUAAAGCCAUGACUUUAAAACUUUGCCAUUUUCAUUUGCUUAACUUUAAUAGCUG
....((((((((....))))))))....((((((((((.....(((((..(((((....)..))))..)))))..........((...........)).....)))))).)))) ( -23.20)
>consensus
UUUUAAGAGUAU___UAUGCUCUUGAACCAGAAUUAAACACUUGGUCUGAGCUUUAAAAUGAAAGCCAUGACUUUAAAACUUGGCCAUUUUGAUCUGCUUUAUUUAAAUUGACA
.(((((((((((....))))))))))).....................((((.((((((((...((((.............))))))))))))...)))).............. (-13.63 = -16.07 +   2.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:43 2006