| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,300,518 – 9,300,613 |
| Length | 95 |
| Max. P | 0.797831 |
| Location | 9,300,518 – 9,300,613 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 91.00 |
| Mean single sequence MFE | -31.74 |
| Consensus MFE | -23.84 |
| Energy contribution | -23.36 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797831 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9300518 95 + 23771897 GAGGAAAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUUGUGAGCAUGUGUGAGUUCAUGCGAG----UGUGU ............(((..((((((((((((((((..........))))...)))))).........((((((........)))))))))))----).))) ( -26.20) >DroSec_CAF1 148542 97 + 1 GAGGCAAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUUGUGAGCAUGUGUGAGUUCAUAUAUGCU--CGUGU ...((((((........))))))((((((((((..........))))...))))))...........(((((((((((....))))))))))--).... ( -37.60) >DroSim_CAF1 151565 97 + 1 GAGGCAAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUUGUGAGCAUGUGUGAGUUCAUAUGUGCU--CGUGU ...((((((........))))))((((((((((..........))))...))))))...........(((((((((((....))))))))))--).... ( -36.60) >DroYak_CAF1 167404 97 + 1 GAGGAAAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUUGUGAGCAUGUGUGAGUUCAUGUGUGCU--CCUGU .((((..((((((((.....)))((((((((((..........))))...))))))......)))))..(((((..((....))..))))))--))).. ( -29.80) >DroAna_CAF1 148579 97 + 1 GAG--AAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUGGUGAGUGUGUGUGAGUGCAUAUAUAGAUGCCUCU (((--(.....(((..(((.....)))..)))......))))(.(((((.(((.((((....)))))))((((((((....))))))))..))))).). ( -28.50) >consensus GAGGAAAGCAAAGCAAAGCUUGCGGCUGAGCUAAUCAAUCUCGUGGCAUGUCAGCCAGUCAAUUUGUGAGCAUGUGUGAGUUCAUAUGUGCU__CGUGU .......((((.((...))))))((((((((((..........))))...)))))).............(((((((((....)))))))))........ (-23.84 = -23.36 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006