| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,299,384 – 9,299,478 |
| Length | 94 |
| Max. P | 0.888134 |
| Location | 9,299,384 – 9,299,478 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 86.90 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -26.17 |
| Energy contribution | -25.95 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.22 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9299384 94 + 23771897 AUG----A-UAUGU------GGUAUGAUGG--GACCCCUUUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCAACAA ...----.-..(((------((((((((.(--(.((((....)))))).))))).......(((((((..((((.....))))..))))))).......))).))). ( -35.00) >DroSec_CAF1 147440 96 + 1 AUG----A-UAUGU------GGUAUGAUGGGGGACCCCUUUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCGACAA (((----(-...((------((((....(((....)))((((((.(((.(((....))).))).)))))).))))))))))...((((((.........)))))).. ( -36.20) >DroSim_CAF1 150498 96 + 1 AUG----A-UAUGU------GGUAUGAUGGGGGACCCCUUUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCGACAA (((----(-...((------((((....(((....)))((((((.(((.(((....))).))).)))))).))))))))))...((((((.........)))))).. ( -36.20) >DroWil_CAF1 265762 101 + 1 CUC----AGUUUACAGAGUAAGUAUGGCAGUAGACCCCUUU--GGGAUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAACCGAAAA .((----.((((.....((....(((((......(((....--)))...)))))...))..(((((((..((((.....))))..))))))).....)))).))... ( -25.20) >DroYak_CAF1 166264 94 + 1 AUG----A-UAUGU------GGCAUGAUGG--AACCCCUUUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCCACAA ...----.-..(((------((((((((.(--..((((....)))).).))))).......(((((((..((((.....))))..))))))).......).))))). ( -32.60) >DroAna_CAF1 147336 96 + 1 GUGAAAUA-UAUGU------GGCUUGACAG---ACCCC-UUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCAACAA ........-..(((------(((((..(((---.((((-...)))))))(((....)))..(((((((..((((.....))))..))))))).....))))).))). ( -35.60) >consensus AUG____A_UAUGU______GGUAUGAUGG__GACCCCUUUUGGGGCUGGUCAUUUGACAAGUGCCAAAGUUGCCACUCGUAAAGUUGGCGCAAUAAAAGCCGACAA ....................((((((((.(....((((....)))).).))))).......(((((((..((((.....))))..))))))).......)))..... (-26.17 = -25.95 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:40 2006