Locus 3189

Sequence ID 3L_DroMel_CAF1
Location 9,298,673 – 9,298,764
Length 91
Max. P 0.558504
window4969

overview

Window 9

Location 9,298,673 – 9,298,764
Length 91
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 92.95
Mean single sequence MFE -27.97
Consensus MFE -25.88
Energy contribution -25.82
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.33
Structure conservation index 0.93
SVM decision value 0.05
SVM RNA-class probability 0.558504
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9298673 91 - 23771897
AGAGCGCGCGACGGAAACGGAAAUGUCAAUGGCAGCUCAAAAACGGUGACAACGGCGGUGAAAACAAAAUGUGCGUGCCUUUGUCUCUGCG-------
.((((..((..((....))((....))....)).)))).....(((.(((((.((((((.............)).)))).))))).)))..------- ( -26.52)
>DroSim_CAF1 149790 91 - 1
AGAGCGCGCGACGGAAACGGAAAUGUCAAUGGCAGCUCAAAAACGGUGACAACGGCGGUGAAAACAAAAUGUGCGUGCCUUUGUCUCUGCG-------
.((((..((..((....))((....))....)).)))).....(((.(((((.((((((.............)).)))).))))).)))..------- ( -26.52)
>DroYak_CAF1 165558 91 - 1
AGAGCGCGCGACGGAAACGGAAAUGUCAAUGGCAGCUCAAAAACGGUGACAACGGCGGUGAAAACAAAAUGUGCGUGCCUUUGUCUCUCUC-------
.((((..((..((....))((....))....)).))))......((.(((((.((((((.............)).)))).))))).))...------- ( -24.12)
>DroAna_CAF1 146769 98 - 1
AGAGCGCGCGACGGAAACGGAAAUGUCAAUGGCAGCUCAAAAAUGGUGACAACGGCGGUGAAAACAAAAUGUGCGUGCCUUUGUCGCCGUGGUGUGUG
...((((((..((....))((..(((.....)))..))....((((((((((.((((((.............)).)))).)))))))))).)))))). ( -34.72)
>consensus
AGAGCGCGCGACGGAAACGGAAAUGUCAAUGGCAGCUCAAAAACGGUGACAACGGCGGUGAAAACAAAAUGUGCGUGCCUUUGUCUCUGCG_______
.((((..((..((....))((....))....)).)))).....(((.(((((.((((((.............)).)))).))))).)))......... (-25.88 = -25.82 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:39 2006