| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,292,049 – 9,292,147 |
| Length | 98 |
| Max. P | 0.722530 |
| Location | 9,292,049 – 9,292,147 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 79.93 |
| Mean single sequence MFE | -21.90 |
| Consensus MFE | -12.14 |
| Energy contribution | -12.33 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.722530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9292049 98 + 23771897 AAUUAAUCAAGCGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGGGCAAACGC--GUUGCUUAAACGGCAAAAGGCAAACGGCACU-------UGG .......((((.(...((((...(((.....(((((((((......)))))))))(((((....--.))))).....)))...))))......).))-------)). ( -23.30) >DroSec_CAF1 140187 98 + 1 AAUUAAUCAAGCGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGGGCAAACGC--GCUGCUUAAACGGCAAAAGGCAAACGGCACU-------UGG .......((((.(...((((..........((((((((((......))))))))))((....))--((((......))))...))))......).))-------)). ( -23.10) >DroSim_CAF1 143182 98 + 1 AAUUAAUCAAGCGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGGGCAAACGC--GCUGCUUAAACGGCAAAAGGCAAACGGCACU-------UGG .......((((.(...((((..........((((((((((......))))))))))((....))--((((......))))...))))......).))-------)). ( -23.10) >DroWil_CAF1 249621 81 + 1 AAUUAAUCAAGUGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGUGCAAACGG-CACGGC----------------CCACUUC--U-------UCG ........(((((...(((.............((((((((......))))))))((((.....)-))))))----------------.))))).--.-------... ( -18.80) >DroYak_CAF1 158649 86 + 1 AAUUAAUCAAGCGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUCGUUGGGCAAACGCGCGCCGCUUAAAC--------------GGCACU-------UGG .......((((((...(((((((((((((((....)))))))))........))))))...)))..((((......)--------------)))..)-------)). ( -22.50) >DroAna_CAF1 140420 103 + 1 AAUUAAUCAAGCGAGCGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGGGCAAACGC--GUUGCUUUAACCGCACACC--CUACUACACCCCAGCCCCAG ..............(((..(((((.((((.((((((((((......))))))))))((....))--)))))))))..))).....--.................... ( -20.60) >consensus AAUUAAUCAAGCGAACGCCUAAAGUCAAUUUCAACAAAUUGAUUCAAAUUUGUUGGGCAAACGC__GCUGCUUAAACGGCAAAAG__AAACGGCACU_______UGG ..........(((...(((((((((((((((....)))))))))........))))))...)))........................................... (-12.14 = -12.33 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:37 2006