Locus 3186

Sequence ID 3L_DroMel_CAF1
Location 9,290,802 – 9,290,906
Length 104
Max. P 0.599427
window4965

overview

Window 5

Location 9,290,802 – 9,290,906
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 96.47
Mean single sequence MFE -23.38
Consensus MFE -21.62
Energy contribution -21.25
Covariance contribution -0.38
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.93
SVM decision value 0.13
SVM RNA-class probability 0.599427
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 9290802 104 - 23771897
CAAUUCUCCAUUAAAUAUUACCUCCCUUGGGUUCUUUCCAACUUUGCCGGAAGGAUAAAGUUUAAACUAACUUUUGGAGUGAGGAAUUUUCAAUAUCCAUGAUG
........(((((....((((.(((...(((((..((..(((((((((....)).)))))))..))..)))))..)))))))(((..........))).))))) ( -21.70)
>DroSec_CAF1 138903 104 - 1
GAAUUCUCCAUUAAAUAUUACCUCCCUUGGGUUCUUUCCAACUUUGCCGGAAGGAUAAAGUUUAAACUAACUUUUGGAGUUAGGAAUUUUCAAUAUCCAUGAUG
........(((((........((((...(((((..((..(((((((((....)).)))))))..))..)))))..))))...(((..........))).))))) ( -21.30)
>DroSim_CAF1 141904 104 - 1
GAAUUCUCCAUUAAAUAUUACCUCCCUUGGGUUCUUUCCAACUUUGCCGGAAGGAUAAAGUUUAAACUAACUUUCGGAGUGAGGAAUUUUCAAUAUCCAUGAUG
........(((((....((((.(((...(((((..((..(((((((((....)).)))))))..))..)))))..)))))))(((..........))).))))) ( -21.70)
>DroYak_CAF1 157397 104 - 1
GAAUUCUCCAUUAAAUAUUACCUCCCUUGGGUUCUUUCCAACUUUGCCGGAAGGAUGAAGUUGAGACUAACUUUGGGAGUAAGGAAUUUUCAAUAUCCAUGAUG
........(((((....((((.((((..(((((..(..((((((((((....)).))))))))..)..))))).))))))))(((..........))).))))) ( -28.80)
>consensus
GAAUUCUCCAUUAAAUAUUACCUCCCUUGGGUUCUUUCCAACUUUGCCGGAAGGAUAAAGUUUAAACUAACUUUUGGAGUGAGGAAUUUUCAAUAUCCAUGAUG
........(((((........((((...(((((..((..(((((((((....)).)))))))..))..)))))..))))...(((..........))).))))) (-21.62 = -21.25 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:36 2006