| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 9,271,580 – 9,271,682 |
| Length | 102 |
| Max. P | 0.985945 |
| Location | 9,271,580 – 9,271,682 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.80 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -15.62 |
| Energy contribution | -17.40 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.49 |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.985945 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 9271580 102 + 23771897 UUGCUCUUCCUACUCCAGCUUCAG------CUUCUGUUUGUGUCCU-GCUGCAGGACGAGUGCAUUUGCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC---------AC .((((......((...(((....)------))...))..(((((((-(...))))))..(((((.((((((((...........))))))))..)))))...)))))---------). ( -29.40) >DroSec_CAF1 118274 102 + 1 UUUCUGUUCCUGCUCCAGCUUCAG------CUCCUGUUUGUGUCCU-GCUGCAGGACGAGUGCAUUUGCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC---------AC ...((((((((((..(((.....(------(........))...))-)..))))))...(((((.((((((((...........))))))))..)))))...)))).---------.. ( -31.70) >DroSim_CAF1 118617 108 + 1 UUGCUGUUCCUGCUCCAGCUUCAGCUUUAGCUCCUGUUUGUGUCCU-GCUGCAGGACGAGUGCAUUUGCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC---------AC .((((((((((((..(((.....((...(((....))).))...))-)..))))))...(((((.((((((((...........))))))))..)))))...)))))---------). ( -38.00) >DroWil_CAF1 201428 101 + 1 --GUCGUCGUGGUUGUAGUUGUAG------UCAUUGGUUGGU---UGGUUGUUGGCCGAAUGCAUUUCCAGCUUAAACUCAAUCAGUUGCA------ACAAUGCGGCCACACACAUAC --((.((.(((((((((.((((.(------(.((((((((((---(....(((((............)))))...))).)))))))).)).------))))))))))))))))).... ( -33.70) >DroYak_CAF1 137544 98 + 1 UUGCUGUUGCUGUUCC-----CUG------CUCCUGUUUGUGUCCUGGCUGCAGGACGAGUGCAUUUGCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC---------AC .((((((.((......-----..)------).........(((((((....))))))).(((((.((((((((...........))))))))..)))))...)))))---------). ( -33.90) >DroAna_CAF1 120073 90 + 1 ------UUUUUGGUCC-----UUG------CUGCUGUUUGUGUCCU-UGUGCCGAACGAGUGCAUUUCCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC---------A- ------..........-----.((------((((((((((.((...-...)))))))).(((((.((.(((((...........))))).))..)))))...)))))---------)- ( -24.90) >consensus UUGCUGUUCCUGCUCCAGCUUCAG______CUCCUGUUUGUGUCCU_GCUGCAGGACGAGUGCAUUUGCAGCUUAAACUCAAUCAGCUGUAAUUUGCACAAUGCGGC_________AC ..............................................(((((((......(((((.((((((((...........))))))))..)))))..))))))).......... (-15.62 = -17.40 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:32 2006